Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

Open link

Publication date

September 2018

DOI

10.6084/m9.figshare.7121921.v1

Abstract

Table S2. Biomarker loadings for factors in severe outcomes analysis (Nâ=â254). (DOCX 15 kb

Extracted data

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Data Protection

Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

Open link

Publication date

September 2018

DOI

10.6084/m9.figshare.7121921.v1

Abstract

Table S2. Biomarker loadings for factors in severe outcomes analysis (Nâ=â254). (DOCX 15 kb

Extracted data

George PrayGod (345259)
John Changalucha (243873)
Saidi Kapiga (247732)
Robert Peck (824692)
Jim Todd (44680)
Suzanne Filteau (132124)

January 2017

Univariate analysis of anthropometric and body composition measurements as predictors for pre-diabet...

Additional file 1: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...

Additional file 1: of Immune responses in the treatment of drug-sensitive pulmonary tuberculosis with phenylbutyrate and vitamin D3 as host directed therapy

Rokeya Rekha (5482922)
Akhirunnesa Mily (798430)
Tajnin Sultana (5482925)
Ahsanul Haq (3767296)
Sultan Ahmed (103003)
S. Mostafa Kamal (5482928)
Annemarie van Schadewijk (84908)
Pieter Hiemstra (3661933)
Gudmundur Gudmundsson (472723)
Birgitta Agerberth (218610)
Rubhana Raqib (103005)

July 2018

Table S1. Descriptive statistics of the current studied patients and the patients who were not studi...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Additional file 3: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S3. Biomarker loadings for factors in virologic failure analysis (Nâ=â260). (DOCX 15 kb

Additional file 5: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S5. Biomarker loadings for factors in incident active TB analysis (Nâ=â220). (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Additional file 2: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S2. Progression to IRIS does not alter plasma cytokine/chemokine levels in TB-HIV participant...

Additional file 2: Figures S1 and S2. of Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

Sushma Cribbs (3528416)
Karan Uppal (407054)
Shuzhao Li (180028)
Dean Jones (376526)
Laurence Huang (121862)
Laura Tipton (3495956)
Adam Fitch (130508)
Ruth Greenblatt (365832)
Lawrence Kingsley (388233)
David Guidot (3528413)
Elodie Ghedin (8860)
Alison Morris (371631)

January 2016

Figure S1. Receiver operating characteristic (ROC) curve using the top discriminatory features betwe...

Additional file 4: Table S2. of Immunosenescence of the CD8+ T cell compartment is associated with HIV-infection, but only weakly reflects age-related processes of adipose tissue, metabolism, and muscle in antiretroviral therapy-treated HIV-infected patients and controls

Juliette Tavenier (3548186)
Anne Langkilde (295027)
Thomas Haupt (3548183)
Jens Henriksen (2959797)
Frank Jensen (1287894)
Janne Petersen (94661)
Ove Andersen (295030)

November 2015

Unadjusted and adjusted associations between CD8+ T cell subset sizes and ageing parameters in HIV+....

Additional file 1: Table S1. of Rates of switching to second-line antiretroviral therapy and impact of delayed switching on immunologic, virologic, and mortality outcomes among HIV-infected adults with virologic failure in Rakai, Uganda

Victor Ssempijja (247950)
Gertrude Nakigozi (247948)
Larry Chang (4383901)
Ron Gray (119325)
Maria Wawer (359473)
Anthony Ndyanabo (297231)
Jingo Kasule (3116481)
David Serwadda (150456)
Barbara Castelnuovo (10700)
Anja Hoog (4383904)
Steven Reynolds (1425865)

August 2017

Risk factors of Immunologic decline among HIV infected adults failing on first line ART and switched...

Additional file 1: of Kidney disease risk factors associate with urine biomarkers concentrations in HIV-positive persons; a cross-sectional study

Anthony Muiru (6173771)
Michael Shlipak (198108)
Rebecca Scherzer (198092)
William Zhang (6173774)
Simon Ascher (6173777)
Vasantha Jotwani (6173780)
Carl Grunfeld (198113)
Chirag Parikh (3759676)
Derek Ng (6173783)
Frank Palella (6173786)
Ken Ho (3013458)
Seble Kassaye (247798)
Anjali Sharma (538603)
Mardge Cohen (235024)
Ruibin Wang (1959997)
Qibin Qi (172143)
Michelle Estrella (752514)

January 2019

Table S1. Urine biomarker Assay information. Table showing each biomarker assay information includin...

Additional file 2: Table S2. of Dysglycemia associations with adipose tissue among HIV-infected patients after 2 years of antiretroviral therapy in Mwanza: a follow-up cross-sectional study

George PrayGod (345259)
John Changalucha (243873)
Saidi Kapiga (247732)
Robert Peck (824692)
Jim Todd (44680)
Suzanne Filteau (132124)

January 2017

Univariate analysis of anthropometric and body composition measurements as predictors for pre-diabet...

Additional file 1: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...

Additional file 1: of Immune responses in the treatment of drug-sensitive pulmonary tuberculosis with phenylbutyrate and vitamin D3 as host directed therapy

Rokeya Rekha (5482922)
Akhirunnesa Mily (798430)
Tajnin Sultana (5482925)
Ahsanul Haq (3767296)
Sultan Ahmed (103003)
S. Mostafa Kamal (5482928)
Annemarie van Schadewijk (84908)
Pieter Hiemstra (3661933)
Gudmundur Gudmundsson (472723)
Birgitta Agerberth (218610)
Rubhana Raqib (103005)

July 2018

Table S1. Descriptive statistics of the current studied patients and the patients who were not studi...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Additional file 3: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S3. Biomarker loadings for factors in virologic failure analysis (Nâ=â260). (DOCX 15 kb

Additional file 5: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S5. Biomarker loadings for factors in incident active TB analysis (Nâ=â220). (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Additional file 2: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S2. Progression to IRIS does not alter plasma cytokine/chemokine levels in TB-HIV participant...

Additional file 2: Figures S1 and S2. of Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

Sushma Cribbs (3528416)
Karan Uppal (407054)
Shuzhao Li (180028)
Dean Jones (376526)
Laurence Huang (121862)
Laura Tipton (3495956)
Adam Fitch (130508)
Ruth Greenblatt (365832)
Lawrence Kingsley (388233)
David Guidot (3528413)
Elodie Ghedin (8860)
Alison Morris (371631)

January 2016

Figure S1. Receiver operating characteristic (ROC) curve using the top discriminatory features betwe...

Juliette Tavenier (3548186)
Anne Langkilde (295027)
Thomas Haupt (3548183)
Jens Henriksen (2959797)
Frank Jensen (1287894)
Janne Petersen (94661)
Ove Andersen (295030)

November 2015

Unadjusted and adjusted associations between CD8+ T cell subset sizes and ageing parameters in HIV+....

Victor Ssempijja (247950)
Gertrude Nakigozi (247948)
Larry Chang (4383901)
Ron Gray (119325)
Maria Wawer (359473)
Anthony Ndyanabo (297231)
Jingo Kasule (3116481)
David Serwadda (150456)
Barbara Castelnuovo (10700)
Anja Hoog (4383904)
Steven Reynolds (1425865)

August 2017

Risk factors of Immunologic decline among HIV infected adults failing on first line ART and switched...

Additional file 1: of Kidney disease risk factors associate with urine biomarkers concentrations in HIV-positive persons; a cross-sectional study

Anthony Muiru (6173771)
Michael Shlipak (198108)
Rebecca Scherzer (198092)
William Zhang (6173774)
Simon Ascher (6173777)
Vasantha Jotwani (6173780)
Carl Grunfeld (198113)
Chirag Parikh (3759676)
Derek Ng (6173783)
Frank Palella (6173786)
Ken Ho (3013458)
Seble Kassaye (247798)
Anjali Sharma (538603)
Mardge Cohen (235024)
Ruibin Wang (1959997)
Qibin Qi (172143)
Michelle Estrella (752514)

January 2019

Table S1. Urine biomarker Assay information. Table showing each biomarker assay information includin...

Additional file 2: Table S2. of Dysglycemia associations with adipose tissue among HIV-infected patients after 2 years of antiretroviral therapy in Mwanza: a follow-up cross-sectional study

George PrayGod (345259)
John Changalucha (243873)
Saidi Kapiga (247732)
Robert Peck (824692)
Jim Todd (44680)
Suzanne Filteau (132124)

January 2017

Univariate analysis of anthropometric and body composition measurements as predictors for pre-diabet...

Additional file 1: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...

Additional file 1: of Immune responses in the treatment of drug-sensitive pulmonary tuberculosis with phenylbutyrate and vitamin D3 as host directed therapy

Rokeya Rekha (5482922)
Akhirunnesa Mily (798430)
Tajnin Sultana (5482925)
Ahsanul Haq (3767296)
Sultan Ahmed (103003)
S. Mostafa Kamal (5482928)
Annemarie van Schadewijk (84908)
Pieter Hiemstra (3661933)
Gudmundur Gudmundsson (472723)
Birgitta Agerberth (218610)
Rubhana Raqib (103005)

July 2018

Table S1. Descriptive statistics of the current studied patients and the patients who were not studi...

Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Abstract

Extracted data

Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Abstract

Extracted data

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