Python script to count the type of sequences and also estimate the proportion of spurious alignments for each sequence length as described in de Filippo et al. "Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences"
The amount of data used in phylogenetics has grown explosively in the recent years and many phylogen...
In Bioinformatics, a sequence alignment is a way of arranging the sequence of DNA, RNA or protein to...
Abstract Background Existing tools for multiple-sequence alignment focus on aligning protein sequenc...
Nucleotide alignments of individual chloroplast genes. Python scripts for removal of masked sites. D...
University of Illinois at Urbana-Champaign. Graduate College. Focal Point InitiativeOpe
Results: We have produced a computer program, named sim3, that solves the following computational pr...
Abstract Background The study of ancient DNA is hampered by degradation, resulting in short DNA frag...
Recent technological developments, such as high-throughput sequencing, have enabled the sequencing o...
Given a set of homologous protein/DNA/RNA sequences, finding their multiple alignment means arrangin...
Summary: Palindromic sequences, or inverted repeats (IRs), in DNA sequences involve important biolog...
<p>A simple script in Python which can be used to display alignments from BLAST xml results. Allows ...
The amount of data used in phylogenetics has grown explosively in the recent years and many phylogen...
This file contains the python scripts used in this study. These scripts can be used to analysis next...
Spruceup is an open-source Python software package that utilizes a novel algorithm and allows flexib...
Bash shell and python scripts used to prepare alignments for gene tree inference, phase alleles, and...
The amount of data used in phylogenetics has grown explosively in the recent years and many phylogen...
In Bioinformatics, a sequence alignment is a way of arranging the sequence of DNA, RNA or protein to...
Abstract Background Existing tools for multiple-sequence alignment focus on aligning protein sequenc...
Nucleotide alignments of individual chloroplast genes. Python scripts for removal of masked sites. D...
University of Illinois at Urbana-Champaign. Graduate College. Focal Point InitiativeOpe
Results: We have produced a computer program, named sim3, that solves the following computational pr...
Abstract Background The study of ancient DNA is hampered by degradation, resulting in short DNA frag...
Recent technological developments, such as high-throughput sequencing, have enabled the sequencing o...
Given a set of homologous protein/DNA/RNA sequences, finding their multiple alignment means arrangin...
Summary: Palindromic sequences, or inverted repeats (IRs), in DNA sequences involve important biolog...
<p>A simple script in Python which can be used to display alignments from BLAST xml results. Allows ...
The amount of data used in phylogenetics has grown explosively in the recent years and many phylogen...
This file contains the python scripts used in this study. These scripts can be used to analysis next...
Spruceup is an open-source Python software package that utilizes a novel algorithm and allows flexib...
Bash shell and python scripts used to prepare alignments for gene tree inference, phase alleles, and...
The amount of data used in phylogenetics has grown explosively in the recent years and many phylogen...
In Bioinformatics, a sequence alignment is a way of arranging the sequence of DNA, RNA or protein to...
Abstract Background Existing tools for multiple-sequence alignment focus on aligning protein sequenc...
DOI
Add to ORKG