Additional file 12: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

Publication date

October 2018

DOI

10.6084/m9.figshare.7170560.v1

Abstract

Figure S9. Volcano plot to show the fold change and error rates of differentially expressed genes (DEGs) in RSV-infected rice. Green dots represent DEGs. (PDF 118 kb

Extracted data

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Additional file 12: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

Open link

Publication date

October 2018

DOI

10.6084/m9.figshare.7170560.v1

Abstract

Figure S9. Volcano plot to show the fold change and error rates of differentially expressed genes (DEGs) in RSV-infected rice. Green dots represent DEGs. (PDF 118 kb

Extracted data

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S4. List of 17 down-regulated rice genes that are potentially targeted by rice-specific vsiRNA...

Additional file 17: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S5. List of 6 down-regulated planthopper genes that are potentially targeted by planthopper-sp...

Additional file 1: Figure S1. of Co-infection of two reoviruses increases both viruses accumulation in rice by up-regulating of viroplasm components and movement proteins bilaterally and RNA silencing suppressor unilaterally

Shu Li (136154)
Tong Zhang (103827)
Yingzhi Zhu (4339924)
Guohui Zhou (3692)

August 2017

The expression levels of structural protein genes of SRBSDV (P1 to P4, P8 and P10) at 9, 15 and 20 d...

Additional file 14: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S11. Volcano plot to show the fold change and error rates of differentially expressed genes (...

Additional file 11: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S8. Number of up- and down-regulated genes in RSV-infected rice and planthopper samples compa...

Additional file 13: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S10. Gene ontology (GO) enrichment analysis of the up-regulated genes in RSV-infected rice. (...

Additional file 10: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S7. Percentage of vsiRNAs that were derived from the RSV genomic (+) and antigenomic (â) se...

Additional file 8: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S5. Comparison of size distributions of vsiRNAs in RSV-infected rice and planthopper samples....

Additional file 9: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S6. 5â˛ terminal nucleotide frequency of vsiRNAs in two RSV-infected rice samples (A) and th...

Additional file 15: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S12. Gene ontology (GO) enrichment analysis for the up-regulated genes in small brown plantho...

Additional file 1: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S1. Summary of sRNA sequencing data in mock-inoculated and RSV-infected rice samples. (XLSX 10...

Additional file 3: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replica...

Additional file 5: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S2. Size distribution of sRNAs in the mock-inoculated planthopper samples (A) and other two r...

Additional file 2: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S2. Summary of sRNA sequencing data in mock-inoculated and RSV-infected planthopper samples. (...

Additional file 18: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S6. Primers used for RT-PCR analysis of vsiRNAs in RSV-infected rice and RSV-infected planthop...

Additional file 16: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S4. List of 17 down-regulated rice genes that are potentially targeted by rice-specific vsiRNA...

Additional file 17: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S5. List of 6 down-regulated planthopper genes that are potentially targeted by planthopper-sp...

Shu Li (136154)
Tong Zhang (103827)
Yingzhi Zhu (4339924)
Guohui Zhou (3692)

August 2017

The expression levels of structural protein genes of SRBSDV (P1 to P4, P8 and P10) at 9, 15 and 20 d...

Additional file 14: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S11. Volcano plot to show the fold change and error rates of differentially expressed genes (...

Additional file 11: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S8. Number of up- and down-regulated genes in RSV-infected rice and planthopper samples compa...

Additional file 13: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S10. Gene ontology (GO) enrichment analysis of the up-regulated genes in RSV-infected rice. (...

Additional file 10: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S7. Percentage of vsiRNAs that were derived from the RSV genomic (+) and antigenomic (â) se...

Additional file 8: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S5. Comparison of size distributions of vsiRNAs in RSV-infected rice and planthopper samples....

Additional file 9: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S6. 5â˛ terminal nucleotide frequency of vsiRNAs in two RSV-infected rice samples (A) and th...

Additional file 15: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S12. Gene ontology (GO) enrichment analysis for the up-regulated genes in small brown plantho...

Additional file 1: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S1. Summary of sRNA sequencing data in mock-inoculated and RSV-infected rice samples. (XLSX 10...

Additional file 3: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replica...

Additional file 5: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Figure S2. Size distribution of sRNAs in the mock-inoculated planthopper samples (A) and other two r...

Additional file 2: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S2. Summary of sRNA sequencing data in mock-inoculated and RSV-infected planthopper samples. (...

Additional file 18: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S6. Primers used for RT-PCR analysis of vsiRNAs in RSV-infected rice and RSV-infected planthop...

Additional file 16: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S4. List of 17 down-regulated rice genes that are potentially targeted by rice-specific vsiRNA...

Additional file 17: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Meiling Yang (153319)
Zhongtian Xu (5820452)
Wan Zhao (390898)
Qing Liu (20889)
Qiong Li (346270)
Lu Lu (392)
Renyi Liu (92885)
Xiaoming Zhang (104062)
Feng Cui (23907)

October 2018

Table S5. List of 6 down-regulated planthopper genes that are potentially targeted by planthopper-sp...

Shu Li (136154)
Tong Zhang (103827)
Yingzhi Zhu (4339924)
Guohui Zhou (3692)

August 2017

The expression levels of structural protein genes of SRBSDV (P1 to P4, P8 and P10) at 9, 15 and 20 d...

Additional file 12: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Abstract

Extracted data

Additional file 12: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

Abstract

Extracted data

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