Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Additional file 1: of In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters

Ghofran Othoum (5258480)
Salim Bougouffa (529649)
Rozaimi Razali (553806)
Ameerah Bokhari (5258474)
Soha Alamoudi (5258477)
AndrĂŠ Antunes (5258483)
Xin Gao (14001)
Robert Hoehndorf (38206)
Stefan Arold (487269)
Takashi Gojobori (2581)
Heribert Hirt (30710)
Ivan Mijakovic (27922)
Vladimir Bajic (3479747)
Feras Lafi (3404420)
Magbubah Essack (419839)

May 2018

Table S1. Basic statistics relating to the PacBio SMRT sequencing that was done for B. paralichenifo...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Additional file 1: of Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Pratama, Akbar Adjie
Haq, Irshad Ul
Nazir, Rashid
Chaib De Mares, Maryam
van Elsas, Jan Dirk
Van Elsas lab

December 2017

Table S1 Sequencing statistics analysis of Paraburkholderia terrae BS007, BS110, and BS437. Table S2...

Additional file 3: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Table S2. Gene inventory of 5 genomic islands in Bacillus thuringiensis DNG9 AND seven closely relat...

Additional file 1: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Figure S1. Time-course of growth and emulsification index of B. thuringiensis DNG9 in LB medium at 2...

Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Seghir Daas
Albert Remus R. Rosana
Jeella Z. Acedo
Malika Douzane
Farida Nateche
Salima Kebbouche-Gana
John C. Vederas

October 2018

Abstract Bacillus thuringiensis is widely used as a bioinsecticide due to its ability to form parasp...

Additional file 1: Table S1. of Isolation and characterization of native Bacillus thuringiensis strains from Saudi Arabia with enhanced larvicidal toxicity against the mosquito vector Anopheles gambiae (s.l.)

Talaat El-kersh (3593987)
Ashraf Ahmed (3593984)
Yazeed Al-sheikh (3593990)
FrĂŠdĂŠric Tripet (3594008)
Mohamed Ibrahim (3465677)
Ali Metwalli (3593993)

December 2016

GenBank accession numbers for the 16S rRNA gene sequences of Bt strains and isolates and Gram-positi...

Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

Madhan Tirumalai (39791)
Victor Stepanov (3407987)
Andrea WĂźnsche (5354492)
Saied Montazari (3162378)
Racquel Gonzalez (5354489)
Kasturi Venkateswaran (5354486)
George Fox (3407993)

June 2018

Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 2: Table S2. of Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium

Shumei Zhang (1633060)
Wei Jiang (14986)
Jing Li (10611)
Liqiang Meng (3571676)
Xu Cao (104337)
Jihua Hu (3571679)
Yushuai Liu (3571682)
Jingyu Chen (3571688)
Changqing Sha (3571685)

September 2016

Gene clusters of secondary metabolites synthesis in B.amyloliquefaciens TF28 and B.amyloliquefaciens...

Additional file 2: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Genomic relatedness among the four compared P. thermoglucosidasius strains. Calculation of the digit...

Additional file 1: of In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters

Ghofran Othoum (5258480)
Salim Bougouffa (529649)
Rozaimi Razali (553806)
Ameerah Bokhari (5258474)
Soha Alamoudi (5258477)
AndrĂŠ Antunes (5258483)
Xin Gao (14001)
Robert Hoehndorf (38206)
Stefan Arold (487269)
Takashi Gojobori (2581)
Heribert Hirt (30710)
Ivan Mijakovic (27922)
Vladimir Bajic (3479747)
Feras Lafi (3404420)
Magbubah Essack (419839)

May 2018

Table S1. Basic statistics relating to the PacBio SMRT sequencing that was done for B. paralichenifo...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Additional file 1: of Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Pratama, Akbar Adjie
Haq, Irshad Ul
Nazir, Rashid
Chaib De Mares, Maryam
van Elsas, Jan Dirk
Van Elsas lab

December 2017

Table S1 Sequencing statistics analysis of Paraburkholderia terrae BS007, BS110, and BS437. Table S2...

Additional file 3: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Table S2. Gene inventory of 5 genomic islands in Bacillus thuringiensis DNG9 AND seven closely relat...

Additional file 1: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Figure S1. Time-course of growth and emulsification index of B. thuringiensis DNG9 in LB medium at 2...

Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Seghir Daas
Albert Remus R. Rosana
Jeella Z. Acedo
Malika Douzane
Farida Nateche
Salima Kebbouche-Gana
John C. Vederas

October 2018

Abstract Bacillus thuringiensis is widely used as a bioinsecticide due to its ability to form parasp...

Additional file 1: Table S1. of Isolation and characterization of native Bacillus thuringiensis strains from Saudi Arabia with enhanced larvicidal toxicity against the mosquito vector Anopheles gambiae (s.l.)

Talaat El-kersh (3593987)
Ashraf Ahmed (3593984)
Yazeed Al-sheikh (3593990)
FrĂŠdĂŠric Tripet (3594008)
Mohamed Ibrahim (3465677)
Ali Metwalli (3593993)

December 2016

GenBank accession numbers for the 16S rRNA gene sequences of Bt strains and isolates and Gram-positi...

Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

Madhan Tirumalai (39791)
Victor Stepanov (3407987)
Andrea WĂźnsche (5354492)
Saied Montazari (3162378)
Racquel Gonzalez (5354489)
Kasturi Venkateswaran (5354486)
George Fox (3407993)

June 2018

Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 2: Table S2. of Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium

Shumei Zhang (1633060)
Wei Jiang (14986)
Jing Li (10611)
Liqiang Meng (3571676)
Xu Cao (104337)
Jihua Hu (3571679)
Yushuai Liu (3571682)
Jingyu Chen (3571688)
Changqing Sha (3571685)

September 2016

Gene clusters of secondary metabolites synthesis in B.amyloliquefaciens TF28 and B.amyloliquefaciens...

Additional file 2: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Genomic relatedness among the four compared P. thermoglucosidasius strains. Calculation of the digit...

Additional file 1: of In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters

Ghofran Othoum (5258480)
Salim Bougouffa (529649)
Rozaimi Razali (553806)
Ameerah Bokhari (5258474)
Soha Alamoudi (5258477)
AndrĂŠ Antunes (5258483)
Xin Gao (14001)
Robert Hoehndorf (38206)
Stefan Arold (487269)
Takashi Gojobori (2581)
Heribert Hirt (30710)
Ivan Mijakovic (27922)
Vladimir Bajic (3479747)
Feras Lafi (3404420)
Magbubah Essack (419839)

May 2018

Table S1. Basic statistics relating to the PacBio SMRT sequencing that was done for B. paralichenifo...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Additional file 1: of Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Pratama, Akbar Adjie
Haq, Irshad Ul
Nazir, Rashid
Chaib De Mares, Maryam
van Elsas, Jan Dirk
Van Elsas lab

December 2017

Table S1 Sequencing statistics analysis of Paraburkholderia terrae BS007, BS110, and BS437. Table S2...

Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Abstract

Extracted data

Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Abstract

Extracted data

Related items

Related items