Additional file 6: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

Additional file 2: of CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species

Nathan McDonald (6296411)
Abish Regmi (6296414)
Daniel Morreale (6296417)
Joseph Borowski (6296420)
E. Boyd (6417995)

February 2019

Table S1. Type I-F systems in V. cholerae. Table S2. Type I-F systems in Vibrionaceae. Table S3. Typ...

Additional file 6 of Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.

Olga Bochkareva (6158444)
Elena Moroz (1749487)
Iakov Davydov (6158450)
Mikhail Gelfand (4027)

December 2018

Figure S6. Whole-genome alignments of cepacia strains that were not included in the rearrangement an...

Additional file 6: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

M4 plot of large segmental duplications. Circos plot displays M4 genome LTR positions and segmental ...

Additional file 5: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S3. The number of CRISPR spacers found per each CRISPR array in the analyzed P. parmentieri st...

Additional file 3: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S2. Synteny of intact prophages within the particular P. parmentieri strains. (PNG 1257 kb

Additional file 1: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...

Additional file 4: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S2. Toxins and antitoxins genes encoded within the genomes of analyzed P. parmentieri strains....

Additional file 2: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S1. Comprehensive analysis with locus_tag information on virulence genes, virulence-related ge...

Additional file 1: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Table S1. The biochemical characters and pathogenicity of 32 Chinese Pectobacterium carotovorum stra...

High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska
A. Motyka-Pomagruk
W. Sledz
A. Mengoni
E. Lojkowska

October 2018

Abstract Background Pectobacterium parmentieri is a newly established species within the plant patho...

Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li
Yali Ma
Shuqing Liang
Yu Tian
Sanjun Yin
Sisi Xie
Hua Xie

December 2018

Abstract Background Pectobacterium spp. are necrotrophic bacterial plant pathogens of the family Pec...

Additional file 22: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

PacBio assembly methods and data. A) PacBio SMRT cell genome assembly flow chart overview showing in...

Additional file 1: of Phylogenetic relationship of prophages is affected by CRISPR selection in Group A Streptococcus

Shunsuke Yamada (1291752)
Masaki Shibasaki (4389523)
Kazunori Murase (3505964)
Takayasu Watanabe (221877)
Chihiro Aikawa (221873)
Takashi Nozawa (221866)
Ichiro Nakagawa (189496)

January 2019

Table S1. A Spacer sequneces of type I-C CRISPR identified from all 118 strains. B Spacer sequneces ...

Additional file 3: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S2. Phylogenetic tree based on the amino acid sequences of the srl operon in the 66 Enterobac...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 2: of CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species

Nathan McDonald (6296411)
Abish Regmi (6296414)
Daniel Morreale (6296417)
Joseph Borowski (6296420)
E. Boyd (6417995)

February 2019

Table S1. Type I-F systems in V. cholerae. Table S2. Type I-F systems in Vibrionaceae. Table S3. Typ...

Additional file 6 of Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.

Olga Bochkareva (6158444)
Elena Moroz (1749487)
Iakov Davydov (6158450)
Mikhail Gelfand (4027)

December 2018

Figure S6. Whole-genome alignments of cepacia strains that were not included in the rearrangement an...

Additional file 6: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

M4 plot of large segmental duplications. Circos plot displays M4 genome LTR positions and segmental ...

Additional file 5: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S3. The number of CRISPR spacers found per each CRISPR array in the analyzed P. parmentieri st...

Additional file 3: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S2. Synteny of intact prophages within the particular P. parmentieri strains. (PNG 1257 kb

Additional file 1: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...

Additional file 4: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S2. Toxins and antitoxins genes encoded within the genomes of analyzed P. parmentieri strains....

Additional file 2: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Table S1. Comprehensive analysis with locus_tag information on virulence genes, virulence-related ge...

Additional file 1: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Table S1. The biochemical characters and pathogenicity of 32 Chinese Pectobacterium carotovorum stra...

High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska
A. Motyka-Pomagruk
W. Sledz
A. Mengoni
E. Lojkowska

October 2018

Abstract Background Pectobacterium parmentieri is a newly established species within the plant patho...

Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li
Yali Ma
Shuqing Liang
Yu Tian
Sanjun Yin
Sisi Xie
Hua Xie

December 2018

Abstract Background Pectobacterium spp. are necrotrophic bacterial plant pathogens of the family Pec...

Additional file 22: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

PacBio assembly methods and data. A) PacBio SMRT cell genome assembly flow chart overview showing in...

Additional file 1: of Phylogenetic relationship of prophages is affected by CRISPR selection in Group A Streptococcus

Shunsuke Yamada (1291752)
Masaki Shibasaki (4389523)
Kazunori Murase (3505964)
Takayasu Watanabe (221877)
Chihiro Aikawa (221873)
Takashi Nozawa (221866)
Ichiro Nakagawa (189496)

January 2019

Table S1. A Spacer sequneces of type I-C CRISPR identified from all 118 strains. B Spacer sequneces ...

Additional file 3: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S2. Phylogenetic tree based on the amino acid sequences of the srl operon in the 66 Enterobac...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 2: of CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species

Nathan McDonald (6296411)
Abish Regmi (6296414)
Daniel Morreale (6296417)
Joseph Borowski (6296420)
E. Boyd (6417995)

February 2019

Table S1. Type I-F systems in V. cholerae. Table S2. Type I-F systems in Vibrionaceae. Table S3. Typ...

Additional file 6 of Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.

Olga Bochkareva (6158444)
Elena Moroz (1749487)
Iakov Davydov (6158450)
Mikhail Gelfand (4027)

December 2018

Figure S6. Whole-genome alignments of cepacia strains that were not included in the rearrangement an...

Additional file 6: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

M4 plot of large segmental duplications. Circos plot displays M4 genome LTR positions and segmental ...

Additional file 6: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

Abstract

Extracted data

Additional file 6: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

Abstract

Extracted data

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