Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

Venn diagrams comparing genes and metabolites between the three <i>de novo</i> draft reconstructions and iMK1208.

Hao Wang (39217)
Simonas Marcišauskas (5870105)
Benjamín J. Sánchez (5870108)
Iván Domenzain (5870111)
Daniel Hermansson (5870114)
Rasmus Agren (163876)
Jens Nielsen (10549)
Eduard J. Kerkhoven (187101)

Publication date

October 2018

DOI

10.1371/journal.pcbi.1006541.g003

Publisher

Public Library of Science (PLoS)

Abstract

Venn diagrams comparing genes and metabolites between the three de novo draft reconstructions and iMK1208.</p

Extracted data

Related items

Venn diagrams showing overlapping differentially expressed genes among the six comparisons.

Mohammad R. Irhimeh (614626)
Mohamed Hamed (114597)
Daniel Barthelmes (49609)
Yvonne Gladbach (5504516)
Volkhard Helms (35164)
Weiyong Shen (614624)
Mark C. Gillies (308957)

July 2018

<p>(A) Comparisons 1–5, (B) comparisons 1–4 and 6. In both Venn diagrams the same 80 genes were foun...

Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 with JS57-CK and XZH-F07 with XZH-CK.

Yuli Lin (3515399)
Weikun Zou (4588771)
Shiqiang Lin (614506)
Dennis Onofua (4588759)
Zhijian Yang (217065)
Haizhou Chen (4588762)
Songliang Wang (4588768)
Xuanyang Chen (4588765)

November 2017

<p>Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 wi...

Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated with disease evolution (variation of ALSFRS-r, BMI, MMT, SVC over 1 year) in patients in Group O.

Hélène Blasco (361150)
Franck Patin (5341022)
Amandine Descat (5341019)
Guillaume Garçon (333641)
Philippe Corcia (136280)
Patrick Gelé (5341028)
Timothée Lenglet (2614966)
Peter Bede (3074514)
Vincent Meininger (136286)
David Devos (361156)
Jean François Gossens (5341025)
Pierre-François Pradat (360957)

June 2018

<p>Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated...

Venn diagram showing the comparison of differentially expressed genes between all group comparisons.

Randy J. Hempel (2616502)
John P. Bannantine (263509)
Judith R. Stabel (373007)

April 2016

<p>Venn diagram showing the number of DE genes in each group comparison as well as the numbers of ge...

Venn diagrams of the differentially expressed genes among three molting stages.

Jianjian Lv (492154)
Longtao Zhang (3916490)
Ping Liu (156158)
Jian Li (41607)

April 2017

<p>Venn diagrams of the differentially expressed genes among three molting stages.</p

Venn diagrams of genes selected by the four gene selection algorithms using the KNN classifier on (A) the colon tumor data set and (B) the ALL-AML-3 data set.

Songyot Nakariyakul (6368753)

February 2019

Venn diagrams of genes selected by the four gene selection algorithms using the KNN classifier on (A...

Venn diagrams showing the number of genes that were up-regulated (panel A) and down-regulated (panel B) with fold changes of ≥2.0-fold.

Vanitha Mariappan (199187)
Kumutha Malar Vellasamy (199190)
Jaikumar Thimma (467535)
Onn Haji Hashim (94985)
Jamuna Vadivelu (199199)

October 2013

<p>Venn diagrams showing the number of genes that were up-regulated (panel A) and down-regulated (pa...

Venn diagrams of the significantly A) upregulated genes in all ATC and all PTC and B) downregulated genes in all ATC and all PTC.

Aline Hébrant (124661)
Geneviève Dom (124665)
Michael Dewaele (124668)
Guy Andry (124671)
Christophe Trésallet (124673)
Emmanuelle Leteurtre (124676)
Jacques E. Dumont (124679)
Carine Maenhaut (124681)

October 2012

<p>Venn diagrams of the significantly A) upregulated genes in all ATC and all PTC and B) downregulat...

Venn diagrams depicting number of unique and shared differentially-expressed genes.

Punya Nachappa (460275)
David C. Margolies (460276)
James R. Nechols (460277)
Anna E. Whitfield (442879)
Dorith Rotenberg (442876)

September 2013

<p>Venn diagrams depicting number of unique and shared differentially-expressed genes.</p

Venn diagram of DEGs at different stages.

Tao Zhang (43681)
Xiangqian Zhang (3749950)
Kunpeng Han (3749956)
Genxi Zhang (3749959)
Jinyu Wang (381467)
Kaizhou Xie (3749953)
Qian Xue (355581)
Xiaomei Fan (3749947)

February 2017

<p>A) Venn diagram of differentially expressed lncRNAs in four comparisons (I0 vs. I2, I2 vs. I4, I4...

Venn diagrams for DEG relationships between two groups of blood clam showing the common differentially expressed genes (DEGs) and specific DEGs in each gene set.

Heng Chen (487476)
Guoqiang Xiao (4451971)
Xueliang Chai (4451977)
Xingguan Lin (4451974)
Jun Fang (44152)
Shuangshuang Teng (4451980)

September 2017

<p>Venn diagrams for DEG relationships between two groups of blood clam showing the common different...

Venn diagram for the genomes of UM strains and JDM601, showing shared and strain-specific genes.

Yun Fong Ngeow (62803)
Yan Ling Wong (716013)
Joon Liang Tan (716014)
Kar Wai Hong (716015)
Hien Fuh Ng (716016)
Bee Lee Ong (716017)
Kok Gan Chan (309442)

April 2015

<p>Venn diagram for the genomes of UM strains and JDM601, showing shared and strain-specific genes.<...

Venn diagram analysis of the DE genes by comparing (FS vs. FF) vs. (FS vs. SS).

Noelia Díaz (190099)
Laia Ribas (82632)
Francesc Piferrer (51713)

October 2014

<p>N represents the total number of common genes and the main categories in which genes are clustere...

Venn diagram of (A) the total number of genes detected in all 3 data sets and (B) significantly regulated genes in all 3 models.

Bing Dai (171560)
Valentin David (306497)
Aline Martin (308465)
Jinsong Huang (308466)
Hua Li (46469)
Yan Jiao (308467)
Weikuan Gu (308468)
L. Darryl Quarles (308469)

February 2013

<p>Venn diagram of (A) the total number of genes detected in all 3 data sets and (B) significantly r...

Venn diagram representing the 15 most discriminating metabolites in PLS-DA models which are associated with disease evolution (variation of ALSFRS-r, BMI, MMT, SVC over 1 year) in patients in Group P.

Hélène Blasco (361150)
Franck Patin (5341022)
Amandine Descat (5341019)
Guillaume Garçon (333641)
Philippe Corcia (136280)
Patrick Gelé (5341028)
Timothée Lenglet (2614966)
Peter Bede (3074514)
Vincent Meininger (136286)
David Devos (361156)
Jean François Gossens (5341025)
Pierre-François Pradat (360957)

June 2018

<p>Venn diagram representing the 15 most discriminating metabolites in PLS-DA models which are assoc...

Venn diagrams showing overlapping differentially expressed genes among the six comparisons.

Mohammad R. Irhimeh (614626)
Mohamed Hamed (114597)
Daniel Barthelmes (49609)
Yvonne Gladbach (5504516)
Volkhard Helms (35164)
Weiyong Shen (614624)
Mark C. Gillies (308957)

July 2018

<p>(A) Comparisons 1–5, (B) comparisons 1–4 and 6. In both Venn diagrams the same 80 genes were foun...

Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 with JS57-CK and XZH-F07 with XZH-CK.

Yuli Lin (3515399)
Weikun Zou (4588771)
Shiqiang Lin (614506)
Dennis Onofua (4588759)
Zhijian Yang (217065)
Haizhou Chen (4588762)
Songliang Wang (4588768)
Xuanyang Chen (4588765)

November 2017

<p>Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 wi...

Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated with disease evolution (variation of ALSFRS-r, BMI, MMT, SVC over 1 year) in patients in Group O.

Hélène Blasco (361150)
Franck Patin (5341022)
Amandine Descat (5341019)
Guillaume Garçon (333641)
Philippe Corcia (136280)
Patrick Gelé (5341028)
Timothée Lenglet (2614966)
Peter Bede (3074514)
Vincent Meininger (136286)
David Devos (361156)
Jean François Gossens (5341025)
Pierre-François Pradat (360957)

June 2018

<p>Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated...

Venn diagram showing the comparison of differentially expressed genes between all group comparisons.

Randy J. Hempel (2616502)
John P. Bannantine (263509)
Judith R. Stabel (373007)

April 2016

<p>Venn diagram showing the number of DE genes in each group comparison as well as the numbers of ge...

Venn diagrams of the differentially expressed genes among three molting stages.

Jianjian Lv (492154)
Longtao Zhang (3916490)
Ping Liu (156158)
Jian Li (41607)

April 2017

<p>Venn diagrams of the differentially expressed genes among three molting stages.</p

Venn diagrams of genes selected by the four gene selection algorithms using the KNN classifier on (A) the colon tumor data set and (B) the ALL-AML-3 data set.

Songyot Nakariyakul (6368753)

February 2019

Venn diagrams of genes selected by the four gene selection algorithms using the KNN classifier on (A...

Venn diagrams showing the number of genes that were up-regulated (panel A) and down-regulated (panel B) with fold changes of ≥2.0-fold.

Vanitha Mariappan (199187)
Kumutha Malar Vellasamy (199190)
Jaikumar Thimma (467535)
Onn Haji Hashim (94985)
Jamuna Vadivelu (199199)

October 2013

<p>Venn diagrams showing the number of genes that were up-regulated (panel A) and down-regulated (pa...

Venn diagrams of the significantly A) upregulated genes in all ATC and all PTC and B) downregulated genes in all ATC and all PTC.

Aline Hébrant (124661)
Geneviève Dom (124665)
Michael Dewaele (124668)
Guy Andry (124671)
Christophe Trésallet (124673)
Emmanuelle Leteurtre (124676)
Jacques E. Dumont (124679)
Carine Maenhaut (124681)

October 2012

<p>Venn diagrams of the significantly A) upregulated genes in all ATC and all PTC and B) downregulat...

Venn diagrams depicting number of unique and shared differentially-expressed genes.

Punya Nachappa (460275)
David C. Margolies (460276)
James R. Nechols (460277)
Anna E. Whitfield (442879)
Dorith Rotenberg (442876)

September 2013

<p>Venn diagrams depicting number of unique and shared differentially-expressed genes.</p

Venn diagram of DEGs at different stages.

Tao Zhang (43681)
Xiangqian Zhang (3749950)
Kunpeng Han (3749956)
Genxi Zhang (3749959)
Jinyu Wang (381467)
Kaizhou Xie (3749953)
Qian Xue (355581)
Xiaomei Fan (3749947)

February 2017

<p>A) Venn diagram of differentially expressed lncRNAs in four comparisons (I0 vs. I2, I2 vs. I4, I4...

Venn diagrams for DEG relationships between two groups of blood clam showing the common differentially expressed genes (DEGs) and specific DEGs in each gene set.

Heng Chen (487476)
Guoqiang Xiao (4451971)
Xueliang Chai (4451977)
Xingguan Lin (4451974)
Jun Fang (44152)
Shuangshuang Teng (4451980)

September 2017

<p>Venn diagrams for DEG relationships between two groups of blood clam showing the common different...

Venn diagram for the genomes of UM strains and JDM601, showing shared and strain-specific genes.

Yun Fong Ngeow (62803)
Yan Ling Wong (716013)
Joon Liang Tan (716014)
Kar Wai Hong (716015)
Hien Fuh Ng (716016)
Bee Lee Ong (716017)
Kok Gan Chan (309442)

April 2015

<p>Venn diagram for the genomes of UM strains and JDM601, showing shared and strain-specific genes.<...

Venn diagram analysis of the DE genes by comparing (FS vs. FF) vs. (FS vs. SS).

Noelia Díaz (190099)
Laia Ribas (82632)
Francesc Piferrer (51713)

October 2014

<p>N represents the total number of common genes and the main categories in which genes are clustere...

Venn diagram of (A) the total number of genes detected in all 3 data sets and (B) significantly regulated genes in all 3 models.

Bing Dai (171560)
Valentin David (306497)
Aline Martin (308465)
Jinsong Huang (308466)
Hua Li (46469)
Yan Jiao (308467)
Weikuan Gu (308468)
L. Darryl Quarles (308469)

February 2013

<p>Venn diagram of (A) the total number of genes detected in all 3 data sets and (B) significantly r...

Venn diagram representing the 15 most discriminating metabolites in PLS-DA models which are associated with disease evolution (variation of ALSFRS-r, BMI, MMT, SVC over 1 year) in patients in Group P.

Hélène Blasco (361150)
Franck Patin (5341022)
Amandine Descat (5341019)
Guillaume Garçon (333641)
Philippe Corcia (136280)
Patrick Gelé (5341028)
Timothée Lenglet (2614966)
Peter Bede (3074514)
Vincent Meininger (136286)
David Devos (361156)
Jean François Gossens (5341025)
Pierre-François Pradat (360957)

June 2018

<p>Venn diagram representing the 15 most discriminating metabolites in PLS-DA models which are assoc...

Venn diagrams showing overlapping differentially expressed genes among the six comparisons.

Mohammad R. Irhimeh (614626)
Mohamed Hamed (114597)
Daniel Barthelmes (49609)
Yvonne Gladbach (5504516)
Volkhard Helms (35164)
Weiyong Shen (614624)
Mark C. Gillies (308957)

July 2018

<p>(A) Comparisons 1–5, (B) comparisons 1–4 and 6. In both Venn diagrams the same 80 genes were foun...

Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 with JS57-CK and XZH-F07 with XZH-CK.

Yuli Lin (3515399)
Weikun Zou (4588771)
Shiqiang Lin (614506)
Dennis Onofua (4588759)
Zhijian Yang (217065)
Haizhou Chen (4588762)
Songliang Wang (4588768)
Xuanyang Chen (4588765)

November 2017

<p>Venn diagram showing overlapping differentially expressed genes in the comparisons of JS57-F07 wi...

Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated with disease evolution (variation of ALSFRS-r, BMI, MMT, SVC over 1 year) in patients in Group O.

Hélène Blasco (361150)
Franck Patin (5341022)
Amandine Descat (5341019)
Guillaume Garçon (333641)
Philippe Corcia (136280)
Patrick Gelé (5341028)
Timothée Lenglet (2614966)
Peter Bede (3074514)
Vincent Meininger (136286)
David Devos (361156)
Jean François Gossens (5341025)
Pierre-François Pradat (360957)

June 2018

<p>Venn diagram showing the 15 most discriminating metabolites in PLS-DA models which are associated...