The α-diversity of the bacterial populations of the 83 mink kit feces pool samples displayed as the total number of operational taxonomic units at different numbers of sequence reads.

Relative abundances of bacterial groups from each sample type.

Vanessa Corby-Harris (245633)
Patrick Maes (498534)
Kirk E. Anderson (448990)

April 2014

Libraries (individuals or colonies) were pooled by sample type and the number of sequences belong...

Alpha diversity indices (Chao 1: Richness; Shannon: Evenness; Inverse Simpson’s: Diversity) observed in the feces of commercial mink by year (n = 332), season (n = 117), and life stage (n = 332).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 43, 46, and 39 farms in 2014, 2015, and 2016, respectively.</p

Number of pooled fecal samples collected from adult females and weaned kits collected from commercial mink farms in Ontario.

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Number of pooled fecal samples collected from adult females and weaned kits collected from commercia...

The bacterial populations of the 83 mink kit feces pool samples derived from 16S rRNA classification and grouped according to the litter age.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Pools were grouped according the non-diarrheic (top panel) diarrheic (bottom panel) status. Populati...

The bacterial populations derived from 16S rRNA sequence classification for the sum of all mink kit feces pools grouped as diarrheic and non-diarrheic.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Of the 83 pools included in the study, 80 (38 diarrheic and 42 non-diarrheic) passed the set low cov...

The β-diversity of the bacterial populations of the 83 mink kit feces pool samples.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

The β-diversity is shown as a three-dimensional principal component plot using the Jaccard diversity...

Individual bacterial populations derived from 16S rRNA sequence classification for each of the 84 mink kit feces pool samples grouped as diarrheic and non-diarrheic and ordered according to litter age.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Two each of the diarrheic pools and non-diarrheic pools were run in duplicate. The stars (*) indicat...

The number of sequence reads assigned to viruses for 61 mink kit feces pool samples.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Of the 83 mink kit feces pool samples 61 (30 diarrheic and 31 non-diarrheic) produced sufficient dat...

Relative abundance of the 20 most predominant bacterial genera present in the feces of commercial mink (n = 366).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 43, 46, and 39 farms in 2014, 2015, and 2016, respectively.</p

Median relative abundance of predominant taxonomic classifications of bacteria from the feces of commercial mink (n = 366).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 49 farms in the summers of 2014 and 2015 and winter 2016.</p

Summary of differences in taxa, LEfSE analysis, and beta diversity indices between all comparison groups of the fecal microbiota of mink.

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Summary of differences in taxa, LEfSE analysis, and beta diversity indices between all comparison gr...

Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing.

Julie Melsted Birch
Karin Ullman
Tina Struve
Jens Frederik Agger
Anne Sofie Hammer
Mikael Leijon
Henrik Elvang Jensen

January 2018

Pre-weaning diarrhea (PWD) in mink kits is a common multifactorial syndrome on commercial mink farms...

Relative abundance of bacteriophage species among all bacteriophages detected in the analyzed faecal viromes.

Jana Sachsenröder (326296)
Sven O. Twardziok (524795)
Matthias Scheuch (313763)
Reimar Johne (326300)

February 2014

The diagrams show the number of reads with sequence identities to a certain bacteriophage species...

Bacterial composition in feces from different population groups (relative read abundance by phylum).

Liang Ming (280713)
Li Yi (167757)
Siriguleng (3841750)
Surong Hasi (3841744)
Jing He (58446)
Le Hai (3841741)
Zhaoxia Wang (470659)
Fucheng Guo (3841747)
Xiangyu Qiao (3841753)
Jirimutu (3841738)

March 2017

Sequences that could not be classified into any known group were assigned as ‘Unknown bacteria’.<...

Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Pre-weaning diarrhea (PWD) in mink kits is a common multifactorial syndrome on commercial mink farms...

Relative abundances of bacterial groups from each sample type.

Vanessa Corby-Harris (245633)
Patrick Maes (498534)
Kirk E. Anderson (448990)

April 2014

Libraries (individuals or colonies) were pooled by sample type and the number of sequences belong...

Alpha diversity indices (Chao 1: Richness; Shannon: Evenness; Inverse Simpson’s: Diversity) observed in the feces of commercial mink by year (n = 332), season (n = 117), and life stage (n = 332).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 43, 46, and 39 farms in 2014, 2015, and 2016, respectively.</p

Number of pooled fecal samples collected from adult females and weaned kits collected from commercial mink farms in Ontario.

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Number of pooled fecal samples collected from adult females and weaned kits collected from commercia...

The bacterial populations of the 83 mink kit feces pool samples derived from 16S rRNA classification and grouped according to the litter age.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Pools were grouped according the non-diarrheic (top panel) diarrheic (bottom panel) status. Populati...

The bacterial populations derived from 16S rRNA sequence classification for the sum of all mink kit feces pools grouped as diarrheic and non-diarrheic.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Of the 83 pools included in the study, 80 (38 diarrheic and 42 non-diarrheic) passed the set low cov...

The β-diversity of the bacterial populations of the 83 mink kit feces pool samples.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

The β-diversity is shown as a three-dimensional principal component plot using the Jaccard diversity...

Individual bacterial populations derived from 16S rRNA sequence classification for each of the 84 mink kit feces pool samples grouped as diarrheic and non-diarrheic and ordered according to litter age.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Two each of the diarrheic pools and non-diarrheic pools were run in duplicate. The stars (*) indicat...

The number of sequence reads assigned to viruses for 61 mink kit feces pool samples.

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Of the 83 mink kit feces pool samples 61 (30 diarrheic and 31 non-diarrheic) produced sufficient dat...

Relative abundance of the 20 most predominant bacterial genera present in the feces of commercial mink (n = 366).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 43, 46, and 39 farms in 2014, 2015, and 2016, respectively.</p

Median relative abundance of predominant taxonomic classifications of bacteria from the feces of commercial mink (n = 366).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 49 farms in the summers of 2014 and 2015 and winter 2016.</p

Summary of differences in taxa, LEfSE analysis, and beta diversity indices between all comparison groups of the fecal microbiota of mink.

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Summary of differences in taxa, LEfSE analysis, and beta diversity indices between all comparison gr...

Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing.

Julie Melsted Birch
Karin Ullman
Tina Struve
Jens Frederik Agger
Anne Sofie Hammer
Mikael Leijon
Henrik Elvang Jensen

January 2018

Pre-weaning diarrhea (PWD) in mink kits is a common multifactorial syndrome on commercial mink farms...

Relative abundance of bacteriophage species among all bacteriophages detected in the analyzed faecal viromes.

Jana Sachsenröder (326296)
Sven O. Twardziok (524795)
Matthias Scheuch (313763)
Reimar Johne (326300)

February 2014

The diagrams show the number of reads with sequence identities to a certain bacteriophage species...

Bacterial composition in feces from different population groups (relative read abundance by phylum).

Liang Ming (280713)
Li Yi (167757)
Siriguleng (3841750)
Surong Hasi (3841744)
Jing He (58446)
Le Hai (3841741)
Zhaoxia Wang (470659)
Fucheng Guo (3841747)
Xiangyu Qiao (3841753)
Jirimutu (3841738)

March 2017

Sequences that could not be classified into any known group were assigned as ‘Unknown bacteria’.<...

Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing

Julie Melsted Birch (5870768)
Karin Ullman (501485)
Tina Struve (508627)
Jens Frederik Agger (5870771)
Anne Sofie Hammer (460581)
Mikael Leijon (2951661)
Henrik Elvang Jensen (392915)

October 2018

Pre-weaning diarrhea (PWD) in mink kits is a common multifactorial syndrome on commercial mink farms...

Relative abundances of bacterial groups from each sample type.

Vanessa Corby-Harris (245633)
Patrick Maes (498534)
Kirk E. Anderson (448990)

April 2014

Libraries (individuals or colonies) were pooled by sample type and the number of sequences belong...

Alpha diversity indices (Chao 1: Richness; Shannon: Evenness; Inverse Simpson’s: Diversity) observed in the feces of commercial mink by year (n = 332), season (n = 117), and life stage (n = 332).

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Samples were obtained from 43, 46, and 39 farms in 2014, 2015, and 2016, respectively.</p

Number of pooled fecal samples collected from adult females and weaned kits collected from commercial mink farms in Ontario.

Nicole R. Compo (5954504)
Diego E. Gomez (5954507)
Brian Tapscott (4425040)
J. Scott Weese (313510)
Patricia V. Turner (210748)

November 2018

Number of pooled fecal samples collected from adult females and weaned kits collected from commercia...

The α-diversity of the bacterial populations of the 83 mink kit feces pool samples displayed as the total number of operational taxonomic units at different numbers of sequence reads.

Abstract

Extracted data

The α-diversity of the bacterial populations of the 83 mink kit feces pool samples displayed as the total number of operational taxonomic units at different numbers of sequence reads.

Abstract

Extracted data

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