Additional file 6: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Additional file 5: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 1: of Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

Hao Ma (114667)
Kyle Martin (3711160)
Doug Dixon (6643148)
Alvaro Hernandez (260919)
Gregory Weber (1828339)

April 2019

Table S1. Differentially expressed transcripts among low-, medium- and high-quality eggs identified ...

Additional file 14: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 4: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplement figures from KEGG database and sprayed by the DEGs expression profiles. (PDF 240 kb

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 2: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Singular enrichment analyses among three tissues, grouped by both GOSlim biological process and KEGG...

RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han
Chun-Mean Lin
Thomas T. Chen

October 2018

Abstract Background In the past years, our laboratory successfully generated transgenic rainbow trou...

Additional file 6: of Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Eloi Verrier (5424479)
Carine Genet (22707)
Denis LaloĂŤ (5424485)
Florence Jaffrezic (2220268)
Andrea Rau (473672)
Diane Esquerre (3343025)
Nicolas Dechamp (279221)
CĂŠline Ciobotaru (5424482)
Caroline Hervet (242419)
Francine Krieg (22708)
Luc Jouneau (104380)
Christophe Klopp (120981)
Edwige Quillet (22709)
Pierre Boudinot (104401)

June 2018

Mapping of DEG and innate immune-related genes on the rainbow trout reference genome. (XLSX 17 kb

Additional file 7: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

Confirmation by real-time RT-PCR of selected genes differentially expressed in trout swim-up fry (a)...

Additional file 6: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 8: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

List of primers used in real-time RT-PCR analysis for confirmation of differential expression of sel...

Additional file 7: of Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Eloi Verrier (5424479)
Carine Genet (22707)
Denis LaloĂŤ (5424485)
Florence Jaffrezic (2220268)
Andrea Rau (473672)
Diane Esquerre (3343025)
Nicolas Dechamp (279221)
CĂŠline Ciobotaru (5424482)
Caroline Hervet (242419)
Francine Krieg (22708)
Luc Jouneau (104380)
Christophe Klopp (120981)
Edwige Quillet (22709)
Pierre Boudinot (104401)

June 2018

Mapping of candidates genes and microsatellite/SNP markers on the two versions of the rainbow trout ...

Supplemental Material for Campbell et al., 2019

Matthew A. Campbell (3198591)
Matthew C. Hale (3241842)
Garrett J. McKinney (506143)
Krista M. Nichols (361480)
Devon E. Pearse (3275340)

April 2019

A table of rainbow trout ohnologs originating from the Ss4R as described is provided as Supplemental...

A Study on Transcriptomic Profiling of Differentially Expressed Genes Relevant to Innate and Adaptive Immune Pathways in Transgenic Rainbow Trout (Oncorhynchus mykiss) Harboring Cecropin P1 Transgene

Han, Yueh-Chiang

May 2018

Introduction of antimicrobial peptide (AMP) genes into fish genome by the transgenic technology prov...

Additional file 1: of Differential modulation of host immune genes in the kidney and cranium of the rainbow trout (Oncorhynchus mykiss) in response to Tetracapsuloides bryosalmonae and Myxobolus cerebralis co-infections

Mohamed Kotob (5320025)
Gokhlesh Kumar (3567254)
Mona Saleh (5126690)
Bartolomeo Gorgoglione (5320028)
Mahmoud Abdelzaher (5320031)
Mansour El-Matbouli (277903)

May 2018

Table S1 The correlation of coefficient among different kidney immune genes expression in single and...

Additional file 5: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 1: of Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

Hao Ma (114667)
Kyle Martin (3711160)
Doug Dixon (6643148)
Alvaro Hernandez (260919)
Gregory Weber (1828339)

April 2019

Table S1. Differentially expressed transcripts among low-, medium- and high-quality eggs identified ...

Additional file 14: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 4: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplement figures from KEGG database and sprayed by the DEGs expression profiles. (PDF 240 kb

Additional file 1: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Supplemental figures for pie charts of qualities of clean reads and results of sequencing saturation...

Additional file 2: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han (5874644)
Chun-Mean Lin (5874647)
Thomas Chen (247817)

October 2018

Singular enrichment analyses among three tissues, grouped by both GOSlim biological process and KEGG...

RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Yueh-Chiang Han
Chun-Mean Lin
Thomas T. Chen

October 2018

Abstract Background In the past years, our laboratory successfully generated transgenic rainbow trou...

Additional file 6: of Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Eloi Verrier (5424479)
Carine Genet (22707)
Denis LaloĂŤ (5424485)
Florence Jaffrezic (2220268)
Andrea Rau (473672)
Diane Esquerre (3343025)
Nicolas Dechamp (279221)
CĂŠline Ciobotaru (5424482)
Caroline Hervet (242419)
Francine Krieg (22708)
Luc Jouneau (104380)
Christophe Klopp (120981)
Edwige Quillet (22709)
Pierre Boudinot (104401)

June 2018

Mapping of DEG and innate immune-related genes on the rainbow trout reference genome. (XLSX 17 kb

Additional file 7: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

Confirmation by real-time RT-PCR of selected genes differentially expressed in trout swim-up fry (a)...

Additional file 6: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 8: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

Mukundh Balasubramanian (3564614)
Stephane Panserat (3564623)
Mathilde Dupont-Nivet (143686)
Edwige Quillet (22709)
Jerome Montfort (3564617)
Aurelie Le Cam (3497714)
Francoise Medale (3564620)
Sadasivam Kaushik (421073)
Inge Geurden (326970)

June 2016

List of primers used in real-time RT-PCR analysis for confirmation of differential expression of sel...

Additional file 7: of Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Eloi Verrier (5424479)
Carine Genet (22707)
Denis LaloĂŤ (5424485)
Florence Jaffrezic (2220268)
Andrea Rau (473672)
Diane Esquerre (3343025)
Nicolas Dechamp (279221)
CĂŠline Ciobotaru (5424482)
Caroline Hervet (242419)
Francine Krieg (22708)
Luc Jouneau (104380)
Christophe Klopp (120981)
Edwige Quillet (22709)
Pierre Boudinot (104401)

June 2018

Mapping of candidates genes and microsatellite/SNP markers on the two versions of the rainbow trout ...

Supplemental Material for Campbell et al., 2019

Matthew A. Campbell (3198591)
Matthew C. Hale (3241842)
Garrett J. McKinney (506143)
Krista M. Nichols (361480)
Devon E. Pearse (3275340)

April 2019

A table of rainbow trout ohnologs originating from the Ss4R as described is provided as Supplemental...

A Study on Transcriptomic Profiling of Differentially Expressed Genes Relevant to Innate and Adaptive Immune Pathways in Transgenic Rainbow Trout (Oncorhynchus mykiss) Harboring Cecropin P1 Transgene

Han, Yueh-Chiang

May 2018

Introduction of antimicrobial peptide (AMP) genes into fish genome by the transgenic technology prov...

Additional file 1: of Differential modulation of host immune genes in the kidney and cranium of the rainbow trout (Oncorhynchus mykiss) in response to Tetracapsuloides bryosalmonae and Myxobolus cerebralis co-infections

Mohamed Kotob (5320025)
Gokhlesh Kumar (3567254)
Mona Saleh (5126690)
Bartolomeo Gorgoglione (5320028)
Mahmoud Abdelzaher (5320031)
Mansour El-Matbouli (277903)

May 2018

Table S1 The correlation of coefficient among different kidney immune genes expression in single and...

Additional file 5: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 1: of Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

Hao Ma (114667)
Kyle Martin (3711160)
Doug Dixon (6643148)
Alvaro Hernandez (260919)
Gregory Weber (1828339)

April 2019

Table S1. Differentially expressed transcripts among low-, medium- and high-quality eggs identified ...

Additional file 14: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 6: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Abstract

Extracted data

Additional file 6: of RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)

Abstract

Extracted data

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