Additional file 7: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Additional file 1 of Downregulation of exosomal miR-7-5p promotes breast cancer migration and invasion by targeting RYK and participating in the atypical WNT signalling pathway

Zhaoyi Liang (13930993)
Lu Liu (171341)
Ruixia Gao (10179132)
Chengchuan Che (4849825)
Ge Yang (169466)

October 2022

Additional file 1: Table S1. Sequences of oligonucleotide fragment. Table S2 Sequences of primers re...

Additional file 4: of Tamoxifen reverses epithelialâmesenchymal transition by demethylating miR-200c in triple-negative breast cancer cells

Qian Wang (32718)
Yu Cheng (136592)
Yan Wang (15435)
Yibo Fan (4259962)
Ce Li (4259956)
Ye Zhang (132223)
Yiding Wang (2179294)
Qian Dong (414788)
Yanju Ma (4259959)
Yue-e Teng (502221)
Xiujuan Qu (493024)
Yunpeng Liu (379288)

July 2017

Raw data of microarray analysis. Full list of deregulated miRNAs (>2 fold). 1 represented for MCF-7,...

Additional file 1: of A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling

Dong-Yu Wang (1663150)
Deena Gendoo (3417176)
Yaacov Ben-David (3337983)
James Woodgett (264425)
Eldad Zacksenhaus (6904)

February 2019

Figure S1. Overview of breast cancer (BC) datasets, cohorts and groups used in this project, and sub...

Additional file 6: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Figure S3. Heatmap for TNBC versus DPBC data from the TCGA data set. (TIFF 381 kb

Additional file 3: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S3. TCGA tissue microRNAs differentially expressed for TNBC versus DPBC cancers (fold change ≤...

Additional file 1: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S1. TCGA tissue microRNAs differentially expressed for TNBC versus normal tissue (fold change ...

Additional file 2: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S2. TCGA tissue microRNAs differentially expressed for DPBC versus normal tissue (fold change ...

Additional file 4: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Table S4. miRNAs binding sites prediction in human HER2 and HER3 3âUTR. (XLSX 26 kb

Additional file 3: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Table S3. Shared miRNAs binding sites prediction in human HER2 and HER4 3âUTR. (XLSX 12 kb

Additional file 8: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Figure S4. Correlation between miR-125a/b and EGFR family proteins in HER2 positive breast cancer pa...

Additional file 1: Table S1. of MiR-25-3p promotes the proliferation of triple negative breast cancer by targeting BTG2

Hua Chen (43790)
Hong Pan (8686)
Yi Qian (466487)
Wenbin Zhou (295899)
Xiaoan Liu (295914)

January 2018

Nine differentially expressed miRNAs from miRNA microarray assay in TNBC and adjacent normal tissues...

Additional file 3: Figure S2. of miR-720 is a downstream target of an ADAM8-induced ERK signaling cascade that promotes the migratory and invasive phenotype of triple-negative breast cancer cells

Sonia Das (3492668)
Mathilde Romagnoli (256166)
Nora Mineva (3492662)
Sophie Barillé-Nion (3492665)
Pascal Jézéquel (217021)
Mario Campone (217018)
Gail Sonenshein (3492659)

April 2016

Total RNA was isolated from serum samples of TNBC patients or normal individuals and analyzed for mi...

Additional file 7: Figure S4. of The microRNA-15a-PAI-2 axis in cholangiocarcinoma-associated fibroblasts promotes migration of cancer cells

Penkhae Utaijaratrasmi (4780212)
Kulthida Vaeteewoottacharn (4780221)
Takaaki Tsunematsu (140889)
Pranisa Jamjantra (4780218)
Sopit Wongkham (529123)
Chawalit Pairojkul (273289)
Narong Khuntikeo (415025)
Naozumi Ishimaru (111975)
Yongyut Sirivatanauksorn (4780224)
Ananya Pongpaibul (4780215)
Peti Thuwajit (4780209)
Chanitra Thuwajit (754348)
Yasusei Kudo (34605)

January 2018

List of candidate target genes of miR-148a. (A) Four criteria of finding the candidate target genes ...

Additional file 1: of miR-29c plays a suppressive role in breast cancer by targeting the TIMP3/STAT1/FOXO1 pathway

Wan Li (156663)
Jie Yi (680021)
Xiangjin Zheng (5229368)
Shiwei Liu (644396)
Weiqi Fu (1646053)
Liwen Ren (5229371)
Li Li (14993)
Dave Hoon (5229374)
Jinhua Wang (1506)
Guanhua Du (620091)

May 2018

Table S1. Sequence of DNMT3B siRNA. Table S2. Primers of miR-29c and DNMT3B. Table S3. Primers of TI...

Additional file 7: Figure S4. of A multi-omic analysis of human naĂŻve CD4+ T cells

Christopher Mitchell (3253833)
Derese Getnet (174411)
Min-Sik Kim (421554)
Srikanth Manda (3427979)
Praveen Kumar (8242)
Tai-Chung Huang (841150)
Sneha Pinto (3427976)
Raja Nirujogi (3427955)
Mio Iwasaki (2007559)
Patrick Shaw (2904647)
Xinyan Wu (314562)
Jun Zhong (236780)
Raghothama Chaerkady (156766)
Arivusudar Marimuthu (265325)
Babylakshmi Muthusamy (2131045)
Nandini Sahasrabuddhe (3427958)
Rajesh Raju (771787)
Caitlyn Bowman (3427973)
Ludmila Danilova (3427982)
Jevon Cutler (3427964)
Dhanashree Kelkar (1590292)
Charles Drake (3427961)
T. Prasad (3427985)
Luigi Marchionni (363972)
Peter Murakami (171557)
Alan Scott (3427967)
Leming Shi (22343)
Jean Thierry-Mieg (2989)
Danielle Thierry-Mieg (2990)
Rafael Irizarry (6337)
Leslie Cope (49815)
Yasushi Ishihama (44929)
Charles Wang (242565)
Harsha Gowda (1321746)
Akhilesh Pandey (14293)

November 2015

Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...

Additional file 1 of Downregulation of exosomal miR-7-5p promotes breast cancer migration and invasion by targeting RYK and participating in the atypical WNT signalling pathway

Zhaoyi Liang (13930993)
Lu Liu (171341)
Ruixia Gao (10179132)
Chengchuan Che (4849825)
Ge Yang (169466)

October 2022

Additional file 1: Table S1. Sequences of oligonucleotide fragment. Table S2 Sequences of primers re...

Additional file 4: of Tamoxifen reverses epithelialâmesenchymal transition by demethylating miR-200c in triple-negative breast cancer cells

Qian Wang (32718)
Yu Cheng (136592)
Yan Wang (15435)
Yibo Fan (4259962)
Ce Li (4259956)
Ye Zhang (132223)
Yiding Wang (2179294)
Qian Dong (414788)
Yanju Ma (4259959)
Yue-e Teng (502221)
Xiujuan Qu (493024)
Yunpeng Liu (379288)

July 2017

Raw data of microarray analysis. Full list of deregulated miRNAs (>2 fold). 1 represented for MCF-7,...

Additional file 1: of A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling

Dong-Yu Wang (1663150)
Deena Gendoo (3417176)
Yaacov Ben-David (3337983)
James Woodgett (264425)
Eldad Zacksenhaus (6904)

February 2019

Figure S1. Overview of breast cancer (BC) datasets, cohorts and groups used in this project, and sub...

Additional file 6: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Figure S3. Heatmap for TNBC versus DPBC data from the TCGA data set. (TIFF 381 kb

Additional file 3: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S3. TCGA tissue microRNAs differentially expressed for TNBC versus DPBC cancers (fold change ≤...

Additional file 1: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S1. TCGA tissue microRNAs differentially expressed for TNBC versus normal tissue (fold change ...

Additional file 2: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Cornelia Braicu (718341)
Lajos Raduly (5876741)
Gabriela Morar-Bolba (5876744)
Roxana Cojocneanu (5876747)
Ancuta Jurj (3441593)
Laura-Ancuta Pop (5876750)
Valentina Pileczki (718342)
Cristina Ciocan (5876753)
Alin Moldovan (5876756)
Alexandru Irimie (5876759)
Alexandru Eniu (605457)
Patriciu Achimas-Cadariu (718346)
Angelo Paradiso (8377)
Ioana Berindan-Neagoe (605460)

November 2018

Table S2. TCGA tissue microRNAs differentially expressed for DPBC versus normal tissue (fold change ...

Additional file 4: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Table S4. miRNAs binding sites prediction in human HER2 and HER3 3âUTR. (XLSX 26 kb

Additional file 3: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Table S3. Shared miRNAs binding sites prediction in human HER2 and HER4 3âUTR. (XLSX 12 kb

Additional file 8: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

Xin Li (51274)
Yuxiu Xu (5581421)
Yun Ding (234322)
Changfei Li (5581424)
Hong Zhao (325)
Jiandong Wang (596249)
Songdong Meng (420605)

August 2018

Figure S4. Correlation between miR-125a/b and EGFR family proteins in HER2 positive breast cancer pa...

Additional file 1: Table S1. of MiR-25-3p promotes the proliferation of triple negative breast cancer by targeting BTG2

Hua Chen (43790)
Hong Pan (8686)
Yi Qian (466487)
Wenbin Zhou (295899)
Xiaoan Liu (295914)

January 2018

Nine differentially expressed miRNAs from miRNA microarray assay in TNBC and adjacent normal tissues...

Additional file 3: Figure S2. of miR-720 is a downstream target of an ADAM8-induced ERK signaling cascade that promotes the migratory and invasive phenotype of triple-negative breast cancer cells

Sonia Das (3492668)
Mathilde Romagnoli (256166)
Nora Mineva (3492662)
Sophie Barillé-Nion (3492665)
Pascal Jézéquel (217021)
Mario Campone (217018)
Gail Sonenshein (3492659)

April 2016

Total RNA was isolated from serum samples of TNBC patients or normal individuals and analyzed for mi...

Additional file 7: Figure S4. of The microRNA-15a-PAI-2 axis in cholangiocarcinoma-associated fibroblasts promotes migration of cancer cells

Penkhae Utaijaratrasmi (4780212)
Kulthida Vaeteewoottacharn (4780221)
Takaaki Tsunematsu (140889)
Pranisa Jamjantra (4780218)
Sopit Wongkham (529123)
Chawalit Pairojkul (273289)
Narong Khuntikeo (415025)
Naozumi Ishimaru (111975)
Yongyut Sirivatanauksorn (4780224)
Ananya Pongpaibul (4780215)
Peti Thuwajit (4780209)
Chanitra Thuwajit (754348)
Yasusei Kudo (34605)

January 2018

List of candidate target genes of miR-148a. (A) Four criteria of finding the candidate target genes ...

Additional file 1: of miR-29c plays a suppressive role in breast cancer by targeting the TIMP3/STAT1/FOXO1 pathway

Wan Li (156663)
Jie Yi (680021)
Xiangjin Zheng (5229368)
Shiwei Liu (644396)
Weiqi Fu (1646053)
Liwen Ren (5229371)
Li Li (14993)
Dave Hoon (5229374)
Jinhua Wang (1506)
Guanhua Du (620091)

May 2018

Table S1. Sequence of DNMT3B siRNA. Table S2. Primers of miR-29c and DNMT3B. Table S3. Primers of TI...

Additional file 7: Figure S4. of A multi-omic analysis of human naĂŻve CD4+ T cells

Christopher Mitchell (3253833)
Derese Getnet (174411)
Min-Sik Kim (421554)
Srikanth Manda (3427979)
Praveen Kumar (8242)
Tai-Chung Huang (841150)
Sneha Pinto (3427976)
Raja Nirujogi (3427955)
Mio Iwasaki (2007559)
Patrick Shaw (2904647)
Xinyan Wu (314562)
Jun Zhong (236780)
Raghothama Chaerkady (156766)
Arivusudar Marimuthu (265325)
Babylakshmi Muthusamy (2131045)
Nandini Sahasrabuddhe (3427958)
Rajesh Raju (771787)
Caitlyn Bowman (3427973)
Ludmila Danilova (3427982)
Jevon Cutler (3427964)
Dhanashree Kelkar (1590292)
Charles Drake (3427961)
T. Prasad (3427985)
Luigi Marchionni (363972)
Peter Murakami (171557)
Alan Scott (3427967)
Leming Shi (22343)
Jean Thierry-Mieg (2989)
Danielle Thierry-Mieg (2990)
Rafael Irizarry (6337)
Leslie Cope (49815)
Yasushi Ishihama (44929)
Charles Wang (242565)
Harsha Gowda (1321746)
Akhilesh Pandey (14293)

November 2015

Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...

Additional file 1 of Downregulation of exosomal miR-7-5p promotes breast cancer migration and invasion by targeting RYK and participating in the atypical WNT signalling pathway

Zhaoyi Liang (13930993)
Lu Liu (171341)
Ruixia Gao (10179132)
Chengchuan Che (4849825)
Ge Yang (169466)

October 2022

Additional file 1: Table S1. Sequences of oligonucleotide fragment. Table S2 Sequences of primers re...

Additional file 4: of Tamoxifen reverses epithelialâmesenchymal transition by demethylating miR-200c in triple-negative breast cancer cells

Qian Wang (32718)
Yu Cheng (136592)
Yan Wang (15435)
Yibo Fan (4259962)
Ce Li (4259956)
Ye Zhang (132223)
Yiding Wang (2179294)
Qian Dong (414788)
Yanju Ma (4259959)
Yue-e Teng (502221)
Xiujuan Qu (493024)
Yunpeng Liu (379288)

July 2017

Raw data of microarray analysis. Full list of deregulated miRNAs (>2 fold). 1 represented for MCF-7,...

Additional file 1: of A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling

Dong-Yu Wang (1663150)
Deena Gendoo (3417176)
Yaacov Ben-David (3337983)
James Woodgett (264425)
Eldad Zacksenhaus (6904)

February 2019

Figure S1. Overview of breast cancer (BC) datasets, cohorts and groups used in this project, and sub...

Additional file 7: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Abstract

Extracted data

Additional file 7: of Aberrant miRNAs expressed in HER-2 negative breast cancers patient

Abstract

Extracted data

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