Additional file 3: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Additional file 1: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S1. Primers used for quantitative PCR analysis. Sequences of the primers used for qRT-PCR. (XL...

Additional file 4: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Figure S1. Differentially expressed genes. Venn diagram showing the number of differentially express...

Additional file 3: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S3. Alignment statistics obtained by tophat2. Number of sequenced reads, total mapped reads an...

Additional file 4: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S4. Significant canonical pathways represented by unique variants in âaffectedâ subjects. ...

Additional file 5: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S5. Significant canonical pathways represented by unique variants in âunaffectedâ subjects...

Additional file 7: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S7. Significant canonical pathways represented by locus-based (FFB-SKAT) association results. ...

Additional file 9: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S9. Significant canonical pathways represented by unique variants in âaffectedâ subjects f...

Additional file 6: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S6. Top 50 Genes from locus-based (FFB-SKAT) Association Analysis (DOCX 16Â kb

Additional file 10: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S10. Significant canonical pathways represented by unique variants in âunaffectedâ subject...

Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas
Rui Feng
Yingtao Bi
Fan Wang
Soumyaroop Bhattacharya
Jared Mereness
Madhurima Kaushal
C Michael Cotten
Philip L Ballard
Thomas J Mariani
PROP Investigators

October 2018

Abstract Background Previous studies have identified genetic variants associated with bronchopulmona...

Additional file 5: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S4. a. Full list of differentially expressed genes (FDR 2) detected in the severe preterm vs....

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study

Stefano Nobile (ORCID:0000-0002-5304-1485)

January 2015

Background: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns : a pilot study

P. Carrera
C. Di Resta
C. Volonteri
E. Castiglioni
S. Bonfiglio
D. Lazarevic
D. Cittaro
E. Stupka
M. Ferrari
M. Somaschini

December 2015

Background: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study.

Carrera P
Di Resta C
Volonteri C
Castiglioni E
Bonfiglio S
Lazarevic D
Cittaro D
Stupka E
Ferrari M
Somaschini M
Boldrini, A.

January 2015

BACKGROUND: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Additional file 1: of Discovery of rare ancestry-specific variants in the fetal genome that confer risk of preterm premature rupture of membranes (PPROM) and preterm birth

Bhavi Modi (5825438)
Hardik Parikh (3489698)
Maria Teves (5825444)
Rewa Kulkarni (5825447)
Jiang Liyu (5825450)
Roberto Romero (19224)
Timothy York (3978086)
Jerome Strauss (5825453)

October 2018

Table S1. Primers used for METTL7B SNP genotyping. Primers used for genotyping rs115687886, rs138407...

Additional file 1: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S1. Primers used for quantitative PCR analysis. Sequences of the primers used for qRT-PCR. (XL...

Additional file 4: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Figure S1. Differentially expressed genes. Venn diagram showing the number of differentially express...

Additional file 3: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S3. Alignment statistics obtained by tophat2. Number of sequenced reads, total mapped reads an...

Additional file 4: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S4. Significant canonical pathways represented by unique variants in âaffectedâ subjects. ...

Additional file 5: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S5. Significant canonical pathways represented by unique variants in âunaffectedâ subjects...

Additional file 7: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S7. Significant canonical pathways represented by locus-based (FFB-SKAT) association results. ...

Additional file 9: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S9. Significant canonical pathways represented by unique variants in âaffectedâ subjects f...

Additional file 6: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S6. Top 50 Genes from locus-based (FFB-SKAT) Association Analysis (DOCX 16Â kb

Additional file 10: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas (2312002)
Rui Feng (186408)
Yingtao Bi (208237)
Fan Wang (135182)
Soumyaroop Bhattacharya (11666)
Jared Mereness (5876531)
Madhurima Kaushal (5876534)
C Cotten (5876537)
Philip Ballard (5876540)
Thomas Mariani (4676728)

October 2018

Table S10. Significant canonical pathways represented by unique variants in âunaffectedâ subject...

Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Aaron Hamvas
Rui Feng
Yingtao Bi
Fan Wang
Soumyaroop Bhattacharya
Jared Mereness
Madhurima Kaushal
C Michael Cotten
Philip L Ballard
Thomas J Mariani
PROP Investigators

October 2018

Abstract Background Previous studies have identified genetic variants associated with bronchopulmona...

Additional file 5: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S4. a. Full list of differentially expressed genes (FDR 2) detected in the severe preterm vs....

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study

Stefano Nobile (ORCID:0000-0002-5304-1485)

January 2015

Background: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns : a pilot study

P. Carrera
C. Di Resta
C. Volonteri
E. Castiglioni
S. Bonfiglio
D. Lazarevic
D. Cittaro
E. Stupka
M. Ferrari
M. Somaschini

December 2015

Background: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study.

Carrera P
Di Resta C
Volonteri C
Castiglioni E
Bonfiglio S
Lazarevic D
Cittaro D
Stupka E
Ferrari M
Somaschini M
Boldrini, A.

January 2015

BACKGROUND: Bronchopulmonary dysplasia (BPD) is the most common chronic lung disease in infancy, aff...

Additional file 1: of Discovery of rare ancestry-specific variants in the fetal genome that confer risk of preterm premature rupture of membranes (PPROM) and preterm birth

Bhavi Modi (5825438)
Hardik Parikh (3489698)
Maria Teves (5825444)
Rewa Kulkarni (5825447)
Jiang Liyu (5825450)
Roberto Romero (19224)
Timothy York (3978086)
Jerome Strauss (5825453)

October 2018

Table S1. Primers used for METTL7B SNP genotyping. Primers used for genotyping rs115687886, rs138407...

Additional file 1: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S1. Primers used for quantitative PCR analysis. Sequences of the primers used for qRT-PCR. (XL...

Additional file 4: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Figure S1. Differentially expressed genes. Venn diagram showing the number of differentially express...

Additional file 3: of Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Silvana Pereyra (6534593)
Claudio Sosa (3531386)
Bernardo Bertoni (4279693)
Rossana Sapiro (4279699)

April 2019

Table S3. Alignment statistics obtained by tophat2. Number of sequenced reads, total mapped reads an...

Additional file 3: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Abstract

Extracted data

Additional file 3: of Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Abstract

Extracted data

Related items

Related items