Table S5. Parameters for classifying CSTs into one of the three occurrence patterns. (XLSX 11 kb
Gut metabolic modules (GMMs) and abundance inferred from studied gut communities. (XLSX 100 kb
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Table S1. Genus level table indicating the average relative abundances of all taxa in each community...
Figure S4. Distribution of samples into community state types by PMA for (A) throat, (B) nasal, and ...
Table S4. Operational taxonomic units (OTUs) exhibiting a significant association with the CST of a ...
Table S2. Significant associations between taxon abundance at one body site and the CSTs of other bo...
Figure S6. Associations between CST membership and post-menstrual age. The posterior probability of ...
Fecal sample community composition. Plotted in each panel is the community composition of each infan...
Episodic increases in persistent taxa. The “average” panel represents 16S rRNA gene amplicon data av...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Logistic mixed model regression analysis for examining the effect of time from birth on bacterial ge...
Figure S9. Distribution of correlations of OTU shared in common between body sites. PMA and a subjec...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Top 10 most important taxa driving the machine learning model. The top 10 most important variables d...
Gut metabolic modules (GMMs) and abundance inferred from studied gut communities. (XLSX 100 kb
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Table S1. Genus level table indicating the average relative abundances of all taxa in each community...
Figure S4. Distribution of samples into community state types by PMA for (A) throat, (B) nasal, and ...
Table S4. Operational taxonomic units (OTUs) exhibiting a significant association with the CST of a ...
Table S2. Significant associations between taxon abundance at one body site and the CSTs of other bo...
Figure S6. Associations between CST membership and post-menstrual age. The posterior probability of ...
Fecal sample community composition. Plotted in each panel is the community composition of each infan...
Episodic increases in persistent taxa. The “average” panel represents 16S rRNA gene amplicon data av...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Logistic mixed model regression analysis for examining the effect of time from birth on bacterial ge...
Figure S9. Distribution of correlations of OTU shared in common between body sites. PMA and a subjec...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Top 10 most important taxa driving the machine learning model. The top 10 most important variables d...
Gut metabolic modules (GMMs) and abundance inferred from studied gut communities. (XLSX 100 kb
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...