Additional file 1: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Additional file 3: of Evaluation of anti-PD-1-based therapy against triple-negative breast cancer patient-derived xenograft tumors engrafted in humanized mouse models

Roberto Rosato (5722406)
Daniel Dávila-González (5722409)
Dong Choi (3578132)
Wei Qian (56612)
Wen Chen (30046)
Anthony Kozielski (5722412)
Helen Wong (241565)
Bhuvanesh Dave (147341)
Jenny Chang (3489839)

September 2018

IHC analysis of human CD4-, CD3-, CD8-, CD20-, CD68-, CD4-, and CD8-positive cells present in BCM-21...

Additional file 2 of Establishment and genetically characterization of patient-derived xenograft models of cervical cancer

Shuangwei Zou (13763505)
Miaomiao Ye (1836151)
Jian-an Zhang (11990618)
Huihui Ji (653945)
Yijie Chen (110462)
Xueqiong Zhu (10580260)

September 2022

Additional file 2. Table S2. The somatic mutation information of the top ten mutated genes

Additional file 1: of Conversion of human adipose-derived stem cells into functional and expandable endothelial-like cells for cell-based therapies

Fuyi Cheng (3554309)
Yujing Zhang (385508)
Yuan Wang (14955)
Qingyuan Jiang (1403743)
Cheng Zhao (2535307)
Jie Deng (190312)
Xiaolei Chen (2360686)
Yunqi Yao (3554318)
Zhemin Xia (6093407)
Lin Cheng (107461)
Lei Dai (261659)
Gang Shi (1347183)
Yang Yang (45629)
Shuang Zhang (117657)
Dechao Yu (3068661)
Yuquan Wei (267570)
Hongxin Deng (3554306)

December 2018

Table S1. Quantitative RT-PCR primer sequences. Table S2 Antibodies used for immunofluorescence and ...

Additional file 3: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S3. Quantitative PCR data of all genes analyzed for each sample in the PDX cohort. (XLSX 58 kb

Additional file 4: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S4. Quantitative PCR data, including computed values, for each sample analyzed in the PDX coho...

Additional file 2: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S2. Description of oligonucleotides used for multiplex- and nested-gene-specific RT-PCR assays...

Additional file 5: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Figure S1. Simulation and real data of human EPCAM RNA detection in CTC from PDX blood. The expressi...

Additional file 1 of Establishment and genetically characterization of patient-derived xenograft models of cervical cancer

Shuangwei Zou (13763505)
Miaomiao Ye (1836151)
Jian-an Zhang (11990618)
Huihui Ji (653945)
Yijie Chen (110462)
Xueqiong Zhu (10580260)

September 2022

Additional file 1. Table S1. The data of our established cervical cancer PDX lineages

Additional file 1: Figure S1. of Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study

Jia Yu (220212)
Bo Qin (135387)
Ann Moyer (4667851)
Jason Sinnwell (4667854)
Kevin Thompson (2339686)
John Copland (3472688)
Laura Marlow (3472712)
James Miller (4667866)
Ping Yin (54021)
Bowen Gao (1725805)
Katherine Minter-Dykhouse (48469)
Xiaojia Tang (53518)
Sarah McLaughlin (582072)
Alvaro Moreno-Aspitia (3174225)
Anthony Schweitzer (67858)
Yan Lu (32611)
Jason Hubbard (4667863)
Donald Northfelt (4609261)
Richard Gray (2619970)
Katie Hunt (3584678)
Amy Conners (3584669)
Vera Suman (4667857)
Krishna Kalari (257725)
James Ingle (4377457)
Zhenkun Lou (48473)
Daniel Visscher (3682540)
Richard Weinshilboum (840019)
Judy Boughey (4667860)
Matthew Goetz (4609267)
Liewei Wang (142596)

December 2017

Characterization and utilization of PDX models generated from both pretreatment biopsies and surgica...

Additional file 3: of Epithelial cell adhesion molecule (EpCAM) is involved in prostate cancer chemotherapy/radiotherapy response in vivo

Jie Ni (163605)
Paul Cozzi (5956871)
Julia Beretov (145865)
Wei Duan (101868)
Joseph Bucci (5956874)
Peter Graham (831821)
Yong Li (15029)

November 2018

Table S3. The staining intensity of various markers in subcutaneous xenografts CaP model. (DOCX 13 k...

Additional file 13: of Renal cancer: new models and approach for personalizing therapy

Simona di Martino (5722790)
Gabriele De Luca (244081)
Ludovica Grassi (5722796)
Giulia Federici (5722805)
Romina Alfonsi (1549981)
Michele Signore (129959)
Antonio Addario (5722811)
Laura De Salvo (3740305)
Federica Francescangeli (5722814)
Massimo Sanchez (183600)
Valentina Tirelli (547526)
Giovanni Muto (375271)
Isabella Sperduti (85365)
Steno Sentinelli (5722820)
Manuela Costantini (5722823)
Luca Pasquini (168695)
Michele Milella (725941)
Mustapha Haoui (5722826)
Giuseppe Simone (5722829)
Michele Gallucci (5722835)
Ruggero De Maria (129963)
DĂŠsirĂŠe Bonci (5722838)

September 2018

Figure S9. Hematoxylin and Eosin staining of PDXs versus parental primary tumor. G4 tumors often ret...

Additional file 1: of Epithelial cell adhesion molecule (EpCAM) is involved in prostate cancer chemotherapy/radiotherapy response in vivo

Jie Ni (163605)
Paul Cozzi (5956871)
Julia Beretov (145865)
Wei Duan (101868)
Joseph Bucci (5956874)
Peter Graham (831821)
Yong Li (15029)

November 2018

Table S1. List of antibodies used in Western Blot and immunohistochemistry. (DOCX 14 kb

Additional file 1: of Evaluation of anti-PD-1-based therapy against triple-negative breast cancer patient-derived xenograft tumors engrafted in humanized mouse models

Roberto Rosato (5722406)
Daniel DĂĄvila-GonzĂĄlez (5722421)
Dong Choi (3578132)
Wei Qian (56612)
Wen Chen (30046)
Anthony Kozielski (5722412)
Helen Wong (241565)
Bhuvanesh Dave (147341)
Jenny Chang (3489839)

September 2018

Representative figure showing the results of flow cytometric analysis of human cells collected from ...

Additional file 9: of Characterization and validation of potential therapeutic targets based on the molecular signature of patient-derived xenografts in gastric cancer

Zuhua Chen (4065085)
Wenwen Huang (327269)
Tiantian Tian (2735887)
Wanchun Zang (4848091)
Jingyuan Wang (564061)
Zhentao Liu (3609254)
Zhongwu Li (413576)
Yumei Lai (258213)
Zhi Jiang (269212)
Jing Gao (69330)
Lin Shen (507259)

February 2018

Table S6. The expression of PD-L1 in EBV-positive and EBV-negative xenografts. (DOCX 12Â kb

Additional file 2: of XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

Roelof Kluin (5820728)
Kristel Kemper (362317)
Thomas Kuilman (682262)
Julian de Ruiter (5820731)
Vivek Iyer (572160)
Josep Forment (5820734)
Paulien Cornelissen-Steijger (167454)
Iris de Rink (5820737)
Petra ter Brugge (1677586)
Ji-Ying Song (167443)
Sjoerd Klarenbeek (5820740)
Ultan McDermott (213251)
Jos Jonkers (13239)
Arno Velds (23633)
David Adams (202540)
Daniel Peeper (5820743)
Oscar Krijgsman (680688)

October 2018

Table S2. Pathology estimate and SNVs of eight PDX samples. Percentage of mouse stromal cells, detec...

Additional file 3: of Evaluation of anti-PD-1-based therapy against triple-negative breast cancer patient-derived xenograft tumors engrafted in humanized mouse models

Roberto Rosato (5722406)
Daniel Dávila-González (5722409)
Dong Choi (3578132)
Wei Qian (56612)
Wen Chen (30046)
Anthony Kozielski (5722412)
Helen Wong (241565)
Bhuvanesh Dave (147341)
Jenny Chang (3489839)

September 2018

IHC analysis of human CD4-, CD3-, CD8-, CD20-, CD68-, CD4-, and CD8-positive cells present in BCM-21...

Additional file 2 of Establishment and genetically characterization of patient-derived xenograft models of cervical cancer

Shuangwei Zou (13763505)
Miaomiao Ye (1836151)
Jian-an Zhang (11990618)
Huihui Ji (653945)
Yijie Chen (110462)
Xueqiong Zhu (10580260)

September 2022

Additional file 2. Table S2. The somatic mutation information of the top ten mutated genes

Additional file 1: of Conversion of human adipose-derived stem cells into functional and expandable endothelial-like cells for cell-based therapies

Fuyi Cheng (3554309)
Yujing Zhang (385508)
Yuan Wang (14955)
Qingyuan Jiang (1403743)
Cheng Zhao (2535307)
Jie Deng (190312)
Xiaolei Chen (2360686)
Yunqi Yao (3554318)
Zhemin Xia (6093407)
Lin Cheng (107461)
Lei Dai (261659)
Gang Shi (1347183)
Yang Yang (45629)
Shuang Zhang (117657)
Dechao Yu (3068661)
Yuquan Wei (267570)
Hongxin Deng (3554306)

December 2018

Table S1. Quantitative RT-PCR primer sequences. Table S2 Antibodies used for immunofluorescence and ...

Additional file 3: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S3. Quantitative PCR data of all genes analyzed for each sample in the PDX cohort. (XLSX 58 kb

Additional file 4: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S4. Quantitative PCR data, including computed values, for each sample analyzed in the PDX coho...

Additional file 2: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Table S2. Description of oligonucleotides used for multiplex- and nested-gene-specific RT-PCR assays...

Additional file 5: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Chiara Agnoletto (674961)
Linda Minotti (4928155)
Laura Brulle-Soumare (5913470)
Lorenzo Pasquali (336053)
Marco Galasso (386419)
Fabio CorrĂ (4928170)
Federica Baldassari (4928164)
Jean-Gabriel Judde (3562988)
Stefano Cairo (3563012)
Stefano Volinia (19385)

October 2018

Figure S1. Simulation and real data of human EPCAM RNA detection in CTC from PDX blood. The expressi...

Additional file 1 of Establishment and genetically characterization of patient-derived xenograft models of cervical cancer

Shuangwei Zou (13763505)
Miaomiao Ye (1836151)
Jian-an Zhang (11990618)
Huihui Ji (653945)
Yijie Chen (110462)
Xueqiong Zhu (10580260)

September 2022

Additional file 1. Table S1. The data of our established cervical cancer PDX lineages

Additional file 1: Figure S1. of Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study

Jia Yu (220212)
Bo Qin (135387)
Ann Moyer (4667851)
Jason Sinnwell (4667854)
Kevin Thompson (2339686)
John Copland (3472688)
Laura Marlow (3472712)
James Miller (4667866)
Ping Yin (54021)
Bowen Gao (1725805)
Katherine Minter-Dykhouse (48469)
Xiaojia Tang (53518)
Sarah McLaughlin (582072)
Alvaro Moreno-Aspitia (3174225)
Anthony Schweitzer (67858)
Yan Lu (32611)
Jason Hubbard (4667863)
Donald Northfelt (4609261)
Richard Gray (2619970)
Katie Hunt (3584678)
Amy Conners (3584669)
Vera Suman (4667857)
Krishna Kalari (257725)
James Ingle (4377457)
Zhenkun Lou (48473)
Daniel Visscher (3682540)
Richard Weinshilboum (840019)
Judy Boughey (4667860)
Matthew Goetz (4609267)
Liewei Wang (142596)

December 2017

Characterization and utilization of PDX models generated from both pretreatment biopsies and surgica...

Additional file 3: of Epithelial cell adhesion molecule (EpCAM) is involved in prostate cancer chemotherapy/radiotherapy response in vivo

Jie Ni (163605)
Paul Cozzi (5956871)
Julia Beretov (145865)
Wei Duan (101868)
Joseph Bucci (5956874)
Peter Graham (831821)
Yong Li (15029)

November 2018

Table S3. The staining intensity of various markers in subcutaneous xenografts CaP model. (DOCX 13 k...

Additional file 13: of Renal cancer: new models and approach for personalizing therapy

Simona di Martino (5722790)
Gabriele De Luca (244081)
Ludovica Grassi (5722796)
Giulia Federici (5722805)
Romina Alfonsi (1549981)
Michele Signore (129959)
Antonio Addario (5722811)
Laura De Salvo (3740305)
Federica Francescangeli (5722814)
Massimo Sanchez (183600)
Valentina Tirelli (547526)
Giovanni Muto (375271)
Isabella Sperduti (85365)
Steno Sentinelli (5722820)
Manuela Costantini (5722823)
Luca Pasquini (168695)
Michele Milella (725941)
Mustapha Haoui (5722826)
Giuseppe Simone (5722829)
Michele Gallucci (5722835)
Ruggero De Maria (129963)
DĂŠsirĂŠe Bonci (5722838)

September 2018

Figure S9. Hematoxylin and Eosin staining of PDXs versus parental primary tumor. G4 tumors often ret...

Additional file 1: of Epithelial cell adhesion molecule (EpCAM) is involved in prostate cancer chemotherapy/radiotherapy response in vivo

Jie Ni (163605)
Paul Cozzi (5956871)
Julia Beretov (145865)
Wei Duan (101868)
Joseph Bucci (5956874)
Peter Graham (831821)
Yong Li (15029)

November 2018

Table S1. List of antibodies used in Western Blot and immunohistochemistry. (DOCX 14 kb

Additional file 1: of Evaluation of anti-PD-1-based therapy against triple-negative breast cancer patient-derived xenograft tumors engrafted in humanized mouse models

Roberto Rosato (5722406)
Daniel DĂĄvila-GonzĂĄlez (5722421)
Dong Choi (3578132)
Wei Qian (56612)
Wen Chen (30046)
Anthony Kozielski (5722412)
Helen Wong (241565)
Bhuvanesh Dave (147341)
Jenny Chang (3489839)

September 2018

Representative figure showing the results of flow cytometric analysis of human cells collected from ...

Additional file 9: of Characterization and validation of potential therapeutic targets based on the molecular signature of patient-derived xenografts in gastric cancer

Zuhua Chen (4065085)
Wenwen Huang (327269)
Tiantian Tian (2735887)
Wanchun Zang (4848091)
Jingyuan Wang (564061)
Zhentao Liu (3609254)
Zhongwu Li (413576)
Yumei Lai (258213)
Zhi Jiang (269212)
Jing Gao (69330)
Lin Shen (507259)

February 2018

Table S6. The expression of PD-L1 in EBV-positive and EBV-negative xenografts. (DOCX 12Â kb

Additional file 2: of XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

Roelof Kluin (5820728)
Kristel Kemper (362317)
Thomas Kuilman (682262)
Julian de Ruiter (5820731)
Vivek Iyer (572160)
Josep Forment (5820734)
Paulien Cornelissen-Steijger (167454)
Iris de Rink (5820737)
Petra ter Brugge (1677586)
Ji-Ying Song (167443)
Sjoerd Klarenbeek (5820740)
Ultan McDermott (213251)
Jos Jonkers (13239)
Arno Velds (23633)
David Adams (202540)
Daniel Peeper (5820743)
Oscar Krijgsman (680688)

October 2018

Table S2. Pathology estimate and SNVs of eight PDX samples. Percentage of mouse stromal cells, detec...

Additional file 3: of Evaluation of anti-PD-1-based therapy against triple-negative breast cancer patient-derived xenograft tumors engrafted in humanized mouse models

Roberto Rosato (5722406)
Daniel Dávila-González (5722409)
Dong Choi (3578132)
Wei Qian (56612)
Wen Chen (30046)
Anthony Kozielski (5722412)
Helen Wong (241565)
Bhuvanesh Dave (147341)
Jenny Chang (3489839)

September 2018

IHC analysis of human CD4-, CD3-, CD8-, CD20-, CD68-, CD4-, and CD8-positive cells present in BCM-21...

Additional file 2 of Establishment and genetically characterization of patient-derived xenograft models of cervical cancer

Shuangwei Zou (13763505)
Miaomiao Ye (1836151)
Jian-an Zhang (11990618)
Huihui Ji (653945)
Yijie Chen (110462)
Xueqiong Zhu (10580260)

September 2022

Additional file 2. Table S2. The somatic mutation information of the top ten mutated genes

Additional file 1: of Conversion of human adipose-derived stem cells into functional and expandable endothelial-like cells for cell-based therapies

Fuyi Cheng (3554309)
Yujing Zhang (385508)
Yuan Wang (14955)
Qingyuan Jiang (1403743)
Cheng Zhao (2535307)
Jie Deng (190312)
Xiaolei Chen (2360686)
Yunqi Yao (3554318)
Zhemin Xia (6093407)
Lin Cheng (107461)
Lei Dai (261659)
Gang Shi (1347183)
Yang Yang (45629)
Shuang Zhang (117657)
Dechao Yu (3068661)
Yuquan Wei (267570)
Hongxin Deng (3554306)

December 2018

Table S1. Quantitative RT-PCR primer sequences. Table S2 Antibodies used for immunofluorescence and ...

Additional file 1: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Abstract

Extracted data

Topics

Additional file 1: of Heterogeneous expression of EPCAM in human circulating tumour cells from patient-derived xenografts

Abstract

Extracted data

Topics

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