Nucleotide biases of endo-siRNA clusters. Nucleotide biases along the length of all sRNAs mapping to predicted endo-siRNA clusters. sRNAs were anchored at their 5Ⲡnucleotide and biases are displayed as a percentage of the contribution of each nucleotide at each position. Of note is the tendency for a uracil at position 1 which is present in all libraries except the Drosophila 1st instar larval libraries. (PDF 328 kb
Supplementary Tables. Table S1. The 26 RNAi knockdown phenotypes surveyed in this study. We identify...
Table S1. The detailed RNAi genes and its duplicate in D. pseudoobscura. The genomic position is bas...
lists the top 100 RNAi target genes with their Tribolium iBeetle-numbers, Tc-genes and Drosophila or...
Nucleotide biases of piRNA clusters. Nucleotide biases along the length of all sRNAs mapping to pred...
Demonstration of High Uniformity and Low Uniformity sRNA clusters. Two hypothetical hairpin RNAs dem...
Amphimedon endogenous hairpin RNAs. Wiggle plots and predicted secondary structure of three long hig...
Locations of annotated RNAi loci from Drosophila, Amphimedon, Nematostella and Mnemiopsis. Genomic l...
Co-expression of multi-mapping endo-siRNA and piRNA clusters across development. Each plot is divide...
Effect of library depth on uniformity index. Random sampling of reads from the Amphimedon juvenile l...
Work flow for high throughput sequencing and small RNA analysis (SMACR). (A) Drosophila cells were i...
Identified archaeal C/D box sRNAs and predicted rRNA target sites. (Sheet 1) The identified C/D box ...
Table S3. The 91 seed families broadly conserved in Drosophila species, listing for each family the ...
Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...
Figure S2. miRNA variants and their nucleotide bias position. A: MiRNA nucleotide bias at each miRNA...
Table S1. Processed mRNA abundances (measured in fragments per kilobase per million mapped reads (FP...
Supplementary Tables. Table S1. The 26 RNAi knockdown phenotypes surveyed in this study. We identify...
Table S1. The detailed RNAi genes and its duplicate in D. pseudoobscura. The genomic position is bas...
lists the top 100 RNAi target genes with their Tribolium iBeetle-numbers, Tc-genes and Drosophila or...
Nucleotide biases of piRNA clusters. Nucleotide biases along the length of all sRNAs mapping to pred...
Demonstration of High Uniformity and Low Uniformity sRNA clusters. Two hypothetical hairpin RNAs dem...
Amphimedon endogenous hairpin RNAs. Wiggle plots and predicted secondary structure of three long hig...
Locations of annotated RNAi loci from Drosophila, Amphimedon, Nematostella and Mnemiopsis. Genomic l...
Co-expression of multi-mapping endo-siRNA and piRNA clusters across development. Each plot is divide...
Effect of library depth on uniformity index. Random sampling of reads from the Amphimedon juvenile l...
Work flow for high throughput sequencing and small RNA analysis (SMACR). (A) Drosophila cells were i...
Identified archaeal C/D box sRNAs and predicted rRNA target sites. (Sheet 1) The identified C/D box ...
Table S3. The 91 seed families broadly conserved in Drosophila species, listing for each family the ...
Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...
Figure S2. miRNA variants and their nucleotide bias position. A: MiRNA nucleotide bias at each miRNA...
Table S1. Processed mRNA abundances (measured in fragments per kilobase per million mapped reads (FP...
Supplementary Tables. Table S1. The 26 RNAi knockdown phenotypes surveyed in this study. We identify...
Table S1. The detailed RNAi genes and its duplicate in D. pseudoobscura. The genomic position is bas...
lists the top 100 RNAi target genes with their Tribolium iBeetle-numbers, Tc-genes and Drosophila or...