Additional file 7: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Additional file 3: of Cytogenetic and molecular genotyping in the allotetraploid Festuca pratensis × Lolium perenne hybrids

Joanna Majka (3156249)
Katarzyna Bzdęga (6701228)
Agnieszka Janiak (2617589)
Hanna Ćwiek-Kupczyńska (3433268)
Paweł Krajewski (217712)
Tomasz Książczyk (3092472)
Zbigniew Zwierzykowski (6701231)

May 2019

Table S2. The Polymorphism Information Content (PIC) calculated for individual ISSR primer and the P...

Additional file 13: of De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

Matthew Haynsen (5343299)
Mohammad Vatanparast (3252726)
Gouri Mahadwar (5343305)
Dennis Zhu (5343296)
Roy Moger-Reischer (5343302)
Jeff Doyle (3446183)
Keith Crandall (3310695)
Ashley Egan (4049314)

June 2018

Table S4. Allele table for Pueraria subpopulations. Number of alleles discovered for each locus with...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 6: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S6. The statistical parameters of 75 validated primer pairs using eight individuals of each sp...

Additional file 5: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S5. List of SSR primer pairs derived from two species and 129 selected SSR primers. (XLSX 1354...

Additional file 4: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S4. GO annotations of unigenes with Ka/Ks and the results of following enrichment analysis. (X...

Additional file 8: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S8. In silico PCR analysis. Using the primers of C. masuca and C. sinica against the unigene o...

Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu
Hongxing Yang
Kai Jiang
Ling Wang
Boyun Yang
Tungyu Hsieh
Siren Lan
Weichang Huang

November 2018

Abstract Background Calanthe masuca and C. sinica are two genetically closely related species in Orc...

Additional file 7: of Genomic and transcriptomic sequencing of Rosa hybrida provides microsatellite markers for breeding, flower trait improvement and taxonomy studies

Weicong Qi (3484982)
Xi Chen (2754721)
Peihong Fang (5401196)
Shaochuan Shi (5401190)
Jingjing Li (7654)
Xintong Liu (1459243)
Xiaoqian Cao (5401193)
Na Zhao (112953)
Huiyuan Hao (5401187)
Yajie Li (2003443)
Yujie Han (1654195)
Zhao Zhang (52732)

June 2018

A total of 37 randomly selected PCR pairs that were engaged in laboratory PCR are listed in Addition...

Additional file 6: Table S2. of Phylogenetics of subtribe Orchidinae s.l. (Orchidaceae; Orchidoideae) based on seven markers (plastid matK, psaB, rbcL, trnL-F, trnH-psba, and nuclear nrITS, Xdh): implications for generic delimitation

Wei-Tao Jin (517946)
AndrĂŠ Schuiteman (4615612)
Mark Chase (3506018)
Jian-Wu Li (517948)
Shih-Wen Chung (399824)
Tian-Chuan Hsu (641134)
Xiao-Hua Jin (517949)

November 2017

The PCR programs used for amplifying the DNA regions. Table S3. List of primers used for PCR and seq...

Additional file 3: of Characterization of new microsatellite markers based on the transcriptome sequencing of Clematis finetiana

Zhigao Liu (5225405)
Weili Shao (3357584)
Yamei Shen (4043753)
Mengcheng Ji (5225408)
Wenchao Chen (796938)
Ying Ye (72583)
Yongbao Shen (5225411)

May 2018

Details of 210 selected SSR markers used for polymorphism validation. (XLSX 34 kb

Additional file 4: of SSR marker development and intraspecific genetic divergence exploration of Chrysanthemum indicum based on transcriptome analysis

Zhengzhou Han (5143973)
Xinye Ma (255220)
Min Wei (77168)
Tong Zhao (17215)
Ruoting Zhan (677780)
Weiwen Chen (464809)

April 2018

Figure Schematic of identification capacity analysis of 20 SSR primers in all 86 C. indicum germplas...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 9: of De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

Matthew Haynsen (5343299)
Mohammad Vatanparast (3252726)
Gouri Mahadwar (5343305)
Dennis Zhu (5343296)
Roy Moger-Reischer (5343302)
Jeff Doyle (3446183)
Keith Crandall (3310695)
Ashley Egan (4049314)

June 2018

SNPs_CPP02_vs_Pmnk6_CPP27. High-confidence single nucleotide polymorphisms between tropical kudzu CP...

Additional file 4: Figure S1. of Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations

Li Zhang (8200)
Christopher Dietrich (801833)
Daozheng Qin (801832)

July 2016

Estimated number of genetic clusters obtained with Structure for K value ranging from 1 to 10 using ...

Additional file 3: of Cytogenetic and molecular genotyping in the allotetraploid Festuca pratensis × Lolium perenne hybrids

Joanna Majka (3156249)
Katarzyna Bzdęga (6701228)
Agnieszka Janiak (2617589)
Hanna Ćwiek-Kupczyńska (3433268)
Paweł Krajewski (217712)
Tomasz Książczyk (3092472)
Zbigniew Zwierzykowski (6701231)

May 2019

Table S2. The Polymorphism Information Content (PIC) calculated for individual ISSR primer and the P...

Additional file 13: of De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

Matthew Haynsen (5343299)
Mohammad Vatanparast (3252726)
Gouri Mahadwar (5343305)
Dennis Zhu (5343296)
Roy Moger-Reischer (5343302)
Jeff Doyle (3446183)
Keith Crandall (3310695)
Ashley Egan (4049314)

June 2018

Table S4. Allele table for Pueraria subpopulations. Number of alleles discovered for each locus with...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 6: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S6. The statistical parameters of 75 validated primer pairs using eight individuals of each sp...

Additional file 5: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S5. List of SSR primer pairs derived from two species and 129 selected SSR primers. (XLSX 1354...

Additional file 4: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S4. GO annotations of unigenes with Ka/Ks and the results of following enrichment analysis. (X...

Additional file 8: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu (293389)
Hongxing Yang (413809)
Kai Jiang (220274)
Ling Wang (56577)
Boyun Yang (611139)
Tungyu Hsieh (5939975)
Siren Lan (832959)
Weichang Huang (684800)

November 2018

Table S8. In silico PCR analysis. Using the primers of C. masuca and C. sinica against the unigene o...

Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Chao Hu
Hongxing Yang
Kai Jiang
Ling Wang
Boyun Yang
Tungyu Hsieh
Siren Lan
Weichang Huang

November 2018

Abstract Background Calanthe masuca and C. sinica are two genetically closely related species in Orc...

Additional file 7: of Genomic and transcriptomic sequencing of Rosa hybrida provides microsatellite markers for breeding, flower trait improvement and taxonomy studies

Weicong Qi (3484982)
Xi Chen (2754721)
Peihong Fang (5401196)
Shaochuan Shi (5401190)
Jingjing Li (7654)
Xintong Liu (1459243)
Xiaoqian Cao (5401193)
Na Zhao (112953)
Huiyuan Hao (5401187)
Yajie Li (2003443)
Yujie Han (1654195)
Zhao Zhang (52732)

June 2018

A total of 37 randomly selected PCR pairs that were engaged in laboratory PCR are listed in Addition...

Additional file 6: Table S2. of Phylogenetics of subtribe Orchidinae s.l. (Orchidaceae; Orchidoideae) based on seven markers (plastid matK, psaB, rbcL, trnL-F, trnH-psba, and nuclear nrITS, Xdh): implications for generic delimitation

Wei-Tao Jin (517946)
AndrĂŠ Schuiteman (4615612)
Mark Chase (3506018)
Jian-Wu Li (517948)
Shih-Wen Chung (399824)
Tian-Chuan Hsu (641134)
Xiao-Hua Jin (517949)

November 2017

The PCR programs used for amplifying the DNA regions. Table S3. List of primers used for PCR and seq...

Additional file 3: of Characterization of new microsatellite markers based on the transcriptome sequencing of Clematis finetiana

Zhigao Liu (5225405)
Weili Shao (3357584)
Yamei Shen (4043753)
Mengcheng Ji (5225408)
Wenchao Chen (796938)
Ying Ye (72583)
Yongbao Shen (5225411)

May 2018

Details of 210 selected SSR markers used for polymorphism validation. (XLSX 34 kb

Additional file 4: of SSR marker development and intraspecific genetic divergence exploration of Chrysanthemum indicum based on transcriptome analysis

Zhengzhou Han (5143973)
Xinye Ma (255220)
Min Wei (77168)
Tong Zhao (17215)
Ruoting Zhan (677780)
Weiwen Chen (464809)

April 2018

Figure Schematic of identification capacity analysis of 20 SSR primers in all 86 C. indicum germplas...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 9: of De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

Matthew Haynsen (5343299)
Mohammad Vatanparast (3252726)
Gouri Mahadwar (5343305)
Dennis Zhu (5343296)
Roy Moger-Reischer (5343302)
Jeff Doyle (3446183)
Keith Crandall (3310695)
Ashley Egan (4049314)

June 2018

SNPs_CPP02_vs_Pmnk6_CPP27. High-confidence single nucleotide polymorphisms between tropical kudzu CP...

Additional file 4: Figure S1. of Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations

Li Zhang (8200)
Christopher Dietrich (801833)
Daozheng Qin (801832)

July 2016

Estimated number of genetic clusters obtained with Structure for K value ranging from 1 to 10 using ...

Additional file 3: of Cytogenetic and molecular genotyping in the allotetraploid Festuca pratensis × Lolium perenne hybrids

Joanna Majka (3156249)
Katarzyna Bzdęga (6701228)
Agnieszka Janiak (2617589)
Hanna Ćwiek-Kupczyńska (3433268)
Paweł Krajewski (217712)
Tomasz Książczyk (3092472)
Zbigniew Zwierzykowski (6701231)

May 2019

Table S2. The Polymorphism Information Content (PIC) calculated for individual ISSR primer and the P...

Additional file 13: of De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

Matthew Haynsen (5343299)
Mohammad Vatanparast (3252726)
Gouri Mahadwar (5343305)
Dennis Zhu (5343296)
Roy Moger-Reischer (5343302)
Jeff Doyle (3446183)
Keith Crandall (3310695)
Ashley Egan (4049314)

June 2018

Table S4. Allele table for Pueraria subpopulations. Number of alleles discovered for each locus with...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 7: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Abstract

Extracted data

Additional file 7: of Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Abstract

Extracted data

Related items

Related items