Additional file 3: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 5: of Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis

Guohui Xiao (3529880)
Bingjuan Li (5852621)
Hongjun Chen (132548)
Wei Chen (23863)
Zhengyi Wang (190546)
Bizeng Mao (3555398)
Renyi Gui (5852624)
Xiaoqin Guo (527376)

October 2018

Figure S1. Alignment of predicted N and C amino acid sequences of partial COLs from Arabidopsis thal...

Additional file 14: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S8. Down-regulated and up-regulated genes in the most significantly enriched pathways in nrtp...

Additional file 2: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S2. Genetic sequences of LOC_Os05g50270. The ATG and TAG codon were shaded in green, the muta...

Additional file 1: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S1. The phenotype of snfl1 mutant. (A-B) Plants of WT and snfl1 in the field. (C) A culm of W...

Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He
Xiaowen Wang
Xiaobo Zhang
Yudong Jiang
Weijiang Tian
Xiaoqiong Zhang
Yangyang Li
Ying Sun
Jia Xie
Jile Ni
Guanghua He
Xianchun Sang

November 2018

Abstract Background The flag leaf of rice (Oryza sativa L.) is an important determinant of plant typ...

Additional file 3: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S1. Protein sequence of NRTP1. Domains are marked by different colors. A substitution from As...

Additional file 4: Figure S4. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves

Suk-Hwan Kim (3631267)
Choon-Tak Kwon (3631261)
Giha Song (3631264)
Hee-Jong Koh (45781)
Gynheung An (83506)
Nam-Chon Paek (3631255)

January 2018

Confirmation of the overexpression of Z3 by the CaMV 35S promoter in six independent complementation...

Additional file 8: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S6. Phenotypes of transgenic plants overexpressing NRTP1. (A) Comparison of phenotypes betwee...

Additional file 5: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S3. dCAPS marker for molecular identification. (A) DNA sequences of wild type and mutant. The...

Additional file 3: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S1. Sequence alignment of amino acids of OsDWARF4 and PMM1/OsDWARF11. (a) Sequence alignment ...

Additional file 3: Figure S3. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves

Suk-Hwan Kim (3631267)
Choon-Tak Kwon (3631261)
Giha Song (3631264)
Hee-Jong Koh (45781)
Gynheung An (83506)
Nam-Chon Paek (3631255)

January 2018

Amino acid alignment of Z3 homologs in higher plants. The amino acid sequences of Z3 homologs in hig...

Additional file 7: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S5. RT-PCR analysis of NRTP1 expression after SA and JA treatments. Untreated roots are posit...

Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replica...

Additional file 4: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S2. Amino acid alignment of NRTP1 with other CC-NB-LRR proteins identified in rice. Substitut...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 5: of Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis

Guohui Xiao (3529880)
Bingjuan Li (5852621)
Hongjun Chen (132548)
Wei Chen (23863)
Zhengyi Wang (190546)
Bizeng Mao (3555398)
Renyi Gui (5852624)
Xiaoqin Guo (527376)

October 2018

Figure S1. Alignment of predicted N and C amino acid sequences of partial COLs from Arabidopsis thal...

Additional file 14: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S8. Down-regulated and up-regulated genes in the most significantly enriched pathways in nrtp...

Additional file 2: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S2. Genetic sequences of LOC_Os05g50270. The ATG and TAG codon were shaded in green, the muta...

Additional file 1: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He (5950673)
Xiaowen Wang (15759)
Xiaobo Zhang (77133)
Yudong Jiang (5950676)
Weijiang Tian (5950679)
Xiaoqiong Zhang (3192231)
Yangyang Li (554659)
Ying Sun (23237)
Jia Xie (247149)
Jile Ni (5950682)
Guanghua He (3499151)
Xianchun Sang (572670)

November 2018

Figure S1. The phenotype of snfl1 mutant. (A-B) Plants of WT and snfl1 in the field. (C) A culm of W...

Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Peilong He
Xiaowen Wang
Xiaobo Zhang
Yudong Jiang
Weijiang Tian
Xiaoqiong Zhang
Yangyang Li
Ying Sun
Jia Xie
Jile Ni
Guanghua He
Xianchun Sang

November 2018

Abstract Background The flag leaf of rice (Oryza sativa L.) is an important determinant of plant typ...

Additional file 3: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S1. Protein sequence of NRTP1. Domains are marked by different colors. A substitution from As...

Additional file 4: Figure S4. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves

Suk-Hwan Kim (3631267)
Choon-Tak Kwon (3631261)
Giha Song (3631264)
Hee-Jong Koh (45781)
Gynheung An (83506)
Nam-Chon Paek (3631255)

January 2018

Confirmation of the overexpression of Z3 by the CaMV 35S promoter in six independent complementation...

Additional file 8: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S6. Phenotypes of transgenic plants overexpressing NRTP1. (A) Comparison of phenotypes betwee...

Additional file 5: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S3. dCAPS marker for molecular identification. (A) DNA sequences of wild type and mutant. The...

Additional file 3: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Figure S1. Sequence alignment of amino acids of OsDWARF4 and PMM1/OsDWARF11. (a) Sequence alignment ...

Additional file 3: Figure S3. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves

Suk-Hwan Kim (3631267)
Choon-Tak Kwon (3631261)
Giha Song (3631264)
Hee-Jong Koh (45781)
Gynheung An (83506)
Nam-Chon Paek (3631255)

January 2018

Amino acid alignment of Z3 homologs in higher plants. The amino acid sequences of Z3 homologs in hig...

Additional file 7: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S5. RT-PCR analysis of NRTP1 expression after SA and JA treatments. Untreated roots are posit...

Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replica...

Additional file 4: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S2. Amino acid alignment of NRTP1 with other CC-NB-LRR proteins identified in rice. Substitut...

Additional file 5: of Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

Yan Li (23143)
Xuemei Li (232384)
Debao Fu (6080798)
Changyin Wu (13801)

December 2018

Table S3. Primers for qRT-PCR, genotyping, and plasmid construction. (DOCX 18 kb

Additional file 5: of Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis

Guohui Xiao (3529880)
Bingjuan Li (5852621)
Hongjun Chen (132548)
Wei Chen (23863)
Zhengyi Wang (190546)
Bizeng Mao (3555398)
Renyi Gui (5852624)
Xiaoqin Guo (527376)

October 2018

Figure S1. Alignment of predicted N and C amino acid sequences of partial COLs from Arabidopsis thal...

Additional file 14: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S8. Down-regulated and up-regulated genes in the most significantly enriched pathways in nrtp...

Additional file 3: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Abstract

Extracted data

Additional file 3: of Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa)

Abstract

Extracted data

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