Additional file 1: of Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

Model fits to the observed data. Posterior mean (red), 50% (dark blue) and 95% credible (light blue) intervals for θt in terms of log transformed proportions (black). The raw count data are shown in black for comparison. A pseudo-count of 0.65 was added to the raw data prior to normalization and log-transformation to avoid taking the log of zero values. (PDF 163 kb