Proportions of most abundant bacterial families estimated from count data during hourly sampling period. Proportions were estimated by dividing observed counts by the total number of counts observed for each sample. The time-point corresponding to B. ovatus supplementation is depicted as a black line. (PDF 37 kb
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Artificial gut setup. (1) Reactor vessels; (2) flow meters controlling gas inputs; (3) pump-fed medi...
Posterior estimates for the percent of total variation attributable to biological sources is not sen...
Model fits to the observed data. Posterior mean (red), 50% (dark blue) and 95% credible (light blue)...
Dynamics inferred in the balance between the Enterobacteriaceae and all other taxa does not correlat...
Samples were collected over a one month period with both daily and hourly sampling intervals. Daily ...
Posterior 95% credible regions for bacterial dynamics (θ) in the PhILR Basis. (Left) The hierarchica...
An inverse relationship between biological variation and initial relative abundance. 5, 25, 50, 75, ...
Analysis of a toy simulated microbial community demonstrates the advantages of accounting for techni...
Irregular sub-daily oscillation observed in PhILR balance n12 does not correlate with known external...
Four bacterial families comprise most the biological variation in our study. Relative biological var...
Table of parameters in MALLARD model used to analyze artificial gut dataset. For the artificial gut ...
PCoA based on Aitchison distance applied to most abundant bacterial families. To avoid taking the lo...
The decomposition of technical variation among bacterial families. Posterior distribution for log-ra...
Summary of the Kalman Filter, Kalman Smoother, and Backwards Sampling algorithm. (PDF 295 kb
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Artificial gut setup. (1) Reactor vessels; (2) flow meters controlling gas inputs; (3) pump-fed medi...
Posterior estimates for the percent of total variation attributable to biological sources is not sen...
Model fits to the observed data. Posterior mean (red), 50% (dark blue) and 95% credible (light blue)...
Dynamics inferred in the balance between the Enterobacteriaceae and all other taxa does not correlat...
Samples were collected over a one month period with both daily and hourly sampling intervals. Daily ...
Posterior 95% credible regions for bacterial dynamics (θ) in the PhILR Basis. (Left) The hierarchica...
An inverse relationship between biological variation and initial relative abundance. 5, 25, 50, 75, ...
Analysis of a toy simulated microbial community demonstrates the advantages of accounting for techni...
Irregular sub-daily oscillation observed in PhILR balance n12 does not correlate with known external...
Four bacterial families comprise most the biological variation in our study. Relative biological var...
Table of parameters in MALLARD model used to analyze artificial gut dataset. For the artificial gut ...
PCoA based on Aitchison distance applied to most abundant bacterial families. To avoid taking the lo...
The decomposition of technical variation among bacterial families. Posterior distribution for log-ra...
Summary of the Kalman Filter, Kalman Smoother, and Backwards Sampling algorithm. (PDF 295 kb
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Artificial gut setup. (1) Reactor vessels; (2) flow meters controlling gas inputs; (3) pump-fed medi...
Posterior estimates for the percent of total variation attributable to biological sources is not sen...