Supplemental Material for Au et al., 2018

Additional file 1: of Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

Emanuel Gonรงalves (5626652)
Fiona Behan (5626649)
Sandra Louzada (188636)
Damien Arnol (1403572)
Euan Stronach (5626676)
Fengtang Yang (45334)
Kosuke Yusa (3175638)
Oliver Stegle (170916)
Francesco Iorio (408438)
Mathew Garnett (408439)

February 2019

Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...

Supplemental Material for Champer et al., 2019

Jackson Champer (6509158)
Zhaoxin Wen (6509155)
Anisha Luthra (6509165)
Riona Reeves (6509163)
Joan Chung (6509169)
Chen Liu (6509171)
Yoo Lim Lee (6509174)
Jingxian Liu (6509175)
Emily Yang (6509176)
Philipp W. Messer (6509179)
Andrew G. Clark (6509181)

March 2019

Data S1-S6 of "CRISPR gene drive efficiency and resistance rate is highly heritable with no common g...

Additional file 14: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

Gemma Codner (3407399)
Joffrey MiannĂŠ (3407429)
Adam Caulder (3407402)
Jorik Loeffler (5431574)
Rachel Fell (5431583)
Ruairidh King (5431589)
Alasdair Allan (5431595)
Matthew Mackenzie (5431592)
Fran Pike (5431568)
Christopher McCabe (206680)
Skevoulla Christou (5431577)
Sam Joynson (5431580)
Marie Hutchison (3578627)
Michelle Stewart (618852)
Saumya Kumar (530117)
Michelle Simon (530116)
Loranne Agius (2527249)
Quentin Anstee (5431571)
Kirill Volynski (5431598)
Dimitri Kullmann (5431586)
Sara Wells (106305)
Lydia Teboul (106309)

June 2018

Figure S13. Unexpected outcome of CRISPR/Cas9-aided mutagenesis. The figure illustrates an example o...

Supplementary Material for Au et al. 2018

Vinci Au (5943157)
Erica Li-Leger (5943044)
Greta Raymant (5943160)
Stephane Flibotte (5943163)
George Chen (5943166)
Kiana Martin (5943167)
Lisa Fernando (5943169)
Claudia Doell (5943171)
Federico Rosell (5943172)
Su Wang (5943173)
Mark L. Edgley (5943234)
Ann Rougvie (5943178)
Harald Hutter (5943180)
Donald G. Moerman (220906)

November 2018

Table S1: Details of CRISPR designs for selected experimentsTable S2: Editing efficiency for 112 gen...

Supplemental Material for Ratliff et al., 2018

Miriam Ratliff (50838)
Katherine L. Hill-Harfe (4949260)
Elizabeth J. Gleason (4949272)
Huiping Ling (4949266)
Tim L. Kroft (4949263)
Steven W. L'Hernault (4949269)

March 2018

Supplemental Figures S1-S5<br>Table S1: mib-1 mutations<br>Table S2: Primers Used for PCR and CRISPR...

Supplementary Material for Vicencio et al., 2019

Jeremy Vicencio (6263647)
Carmen Martínez-Fernández (6263660)
Xènia Serrat (6263655)
Julián Cerón (6263664)

January 2019

Figure S1 shows the correlation between the number of dpy-10 edits and successful edits in the targe...

Supplemental Material for Xu and Yanagida, 2019

Xingya Xu (6504731)
Mitsuhiro Yanagida (6504735)

March 2019

Table S1 and S2 contain lists the primers used to construct cut14 and cut3 mutants, respectively. Fi...

Supplemental Material for Després et al., 2018

Philippe C Després (5598269)
Alexandre K Dubé (5598291)
Lou Nielly-Thibault (5598327)
Nozomu Yachie (5598344)
Christian R Landry (5598376)

August 2018

Figure S1 shows sequencing of ADE1 loci after Target-AID base editing using double selection. Figure...

Additional file 1: Table S1. of Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR

Maximilian Haeussler (86348)
Kai Schönig (261411)
Hélène Eckert (3577886)
Alexis Eschstruth (535535)
Joffrey Mianné (3407417)
Jean-Baptiste Renaud (230969)
Sylvie Schneider-Maunoury (2557627)
Alena Shkumatava (3577880)
Lydia Teboul (106309)
Jim Kent (274755)
Jean-Stephane Joly (3577883)
Jean-Paul Concordet (269984)

July 2016

Detailed information about CRISPR/Cas9 off-target studies, including first author, PMID, name of the...

Supplemental Material for Chen et al., 2018

Jiun-Sheng Chen (2621860)
Fulan Hu (391592)
Subra Kugathasan (758814)
Lynn B. Jorde (209483)
David Nix (74523)
Ann Rutherford (205246)
Lee Denson (3584135)
W. Scott Watkins (231406)
Sampath Prahalad (93360)
Chad Huff (209473)
Stephen L. Guthery (516993)

June 2018

<div>Table S1 lists 101 targeted genes.</div><div>Table S2 lists 63 testable genes for multiple test...

Additional file 3: of CRISPR-induced exon skipping is dependent on premature termination codon mutations

Tingting Sui (1383423)
Yuning Song (1383429)
Zhiquan Liu (2558917)
Mao Chen (92698)
Jichao Deng (5228960)
Yuanyuan Xu (163995)
Liangxue Lai (351702)
Zhanjun Li (470605)

October 2018

Table S1. Examples according to the published reports on CRISPR/Cas9-induce exon-skipping and the ca...

Supplemental Material for Macaisne, Kessler, and Yanowitz, 2018

Nicolas Macaisne (5747339)
Zebulin Kessler (5747338)
Judith Yanowitz (5747341)

September 2018

Supplemental Figures S1 - S6Supplemental Table S1 contains list of all the strains usedSupplemental ...

Additional file 1: of Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing

Tao Guo (126667)
Yi-Li Feng (5875118)
Jing-Jing Xiao (5875124)
Qian Liu (135614)
Xiu-Na Sun (4869958)
Ji-Feng Xiang (5875130)
Na Kong (1462714)
Si-Cheng Liu (5875133)
Guo-Qiao Chen (5875136)
Yue Wang (65477)
Meng-Meng Dong (5875139)
Zhen Cai (576458)
Hui Lin (161703)
Xiu-Jun Cai (334256)
An-Yong Xie (5875145)

October 2018

Table S1. The frequencies of accurate NHEJ in repair of Cas9-induced DSBs. Table S2. Top five group ...

Additional file 1: of CRISPR/Cas9 Knockout Strategies to Ablate CCAT1 lncRNA Gene in Cancer Cells

Khadijeh Zare (5920046)
Milad Shademan (5920049)
Mohammad Ghahramani Seno (5920052)
Hesam Dehghani (364952)

November 2018

Figure S1. PCR validation of CCAT1 knockout cells. PCR amplification of wild-type (w.t.) and knockou...

Supplemental Material for Paul et al., 2018

Matthew Robert Paul (6041039)
Tovah Elise Markowitz (5470166)
Andreas Hochwagen (159466)
Sevinç Ercan (6041042)

December 2018

A collection of tables that detail the strains used and primers used in this study. There is also t...

Additional file 1: of Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

Emanuel Gonรงalves (5626652)
Fiona Behan (5626649)
Sandra Louzada (188636)
Damien Arnol (1403572)
Euan Stronach (5626676)
Fengtang Yang (45334)
Kosuke Yusa (3175638)
Oliver Stegle (170916)
Francesco Iorio (408438)
Mathew Garnett (408439)

February 2019

Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...

Supplemental Material for Champer et al., 2019

Jackson Champer (6509158)
Zhaoxin Wen (6509155)
Anisha Luthra (6509165)
Riona Reeves (6509163)
Joan Chung (6509169)
Chen Liu (6509171)
Yoo Lim Lee (6509174)
Jingxian Liu (6509175)
Emily Yang (6509176)
Philipp W. Messer (6509179)
Andrew G. Clark (6509181)

March 2019

Data S1-S6 of "CRISPR gene drive efficiency and resistance rate is highly heritable with no common g...

Additional file 14: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

Gemma Codner (3407399)
Joffrey MiannĂŠ (3407429)
Adam Caulder (3407402)
Jorik Loeffler (5431574)
Rachel Fell (5431583)
Ruairidh King (5431589)
Alasdair Allan (5431595)
Matthew Mackenzie (5431592)
Fran Pike (5431568)
Christopher McCabe (206680)
Skevoulla Christou (5431577)
Sam Joynson (5431580)
Marie Hutchison (3578627)
Michelle Stewart (618852)
Saumya Kumar (530117)
Michelle Simon (530116)
Loranne Agius (2527249)
Quentin Anstee (5431571)
Kirill Volynski (5431598)
Dimitri Kullmann (5431586)
Sara Wells (106305)
Lydia Teboul (106309)

June 2018

Figure S13. Unexpected outcome of CRISPR/Cas9-aided mutagenesis. The figure illustrates an example o...

Supplementary Material for Au et al. 2018

Vinci Au (5943157)
Erica Li-Leger (5943044)
Greta Raymant (5943160)
Stephane Flibotte (5943163)
George Chen (5943166)
Kiana Martin (5943167)
Lisa Fernando (5943169)
Claudia Doell (5943171)
Federico Rosell (5943172)
Su Wang (5943173)
Mark L. Edgley (5943234)
Ann Rougvie (5943178)
Harald Hutter (5943180)
Donald G. Moerman (220906)

November 2018

Table S1: Details of CRISPR designs for selected experimentsTable S2: Editing efficiency for 112 gen...

Supplemental Material for Ratliff et al., 2018

Miriam Ratliff (50838)
Katherine L. Hill-Harfe (4949260)
Elizabeth J. Gleason (4949272)
Huiping Ling (4949266)
Tim L. Kroft (4949263)
Steven W. L'Hernault (4949269)

March 2018

Supplemental Figures S1-S5<br>Table S1: mib-1 mutations<br>Table S2: Primers Used for PCR and CRISPR...

Supplementary Material for Vicencio et al., 2019

Jeremy Vicencio (6263647)
Carmen Martínez-Fernández (6263660)
Xènia Serrat (6263655)
Julián Cerón (6263664)

January 2019

Figure S1 shows the correlation between the number of dpy-10 edits and successful edits in the targe...

Supplemental Material for Xu and Yanagida, 2019

Xingya Xu (6504731)
Mitsuhiro Yanagida (6504735)

March 2019

Table S1 and S2 contain lists the primers used to construct cut14 and cut3 mutants, respectively. Fi...

Supplemental Material for Després et al., 2018

Philippe C Després (5598269)
Alexandre K Dubé (5598291)
Lou Nielly-Thibault (5598327)
Nozomu Yachie (5598344)
Christian R Landry (5598376)

August 2018

Figure S1 shows sequencing of ADE1 loci after Target-AID base editing using double selection. Figure...

Additional file 1: Table S1. of Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR

Maximilian Haeussler (86348)
Kai Schönig (261411)
Hélène Eckert (3577886)
Alexis Eschstruth (535535)
Joffrey Mianné (3407417)
Jean-Baptiste Renaud (230969)
Sylvie Schneider-Maunoury (2557627)
Alena Shkumatava (3577880)
Lydia Teboul (106309)
Jim Kent (274755)
Jean-Stephane Joly (3577883)
Jean-Paul Concordet (269984)

July 2016

Detailed information about CRISPR/Cas9 off-target studies, including first author, PMID, name of the...

Supplemental Material for Chen et al., 2018

Jiun-Sheng Chen (2621860)
Fulan Hu (391592)
Subra Kugathasan (758814)
Lynn B. Jorde (209483)
David Nix (74523)
Ann Rutherford (205246)
Lee Denson (3584135)
W. Scott Watkins (231406)
Sampath Prahalad (93360)
Chad Huff (209473)
Stephen L. Guthery (516993)

June 2018

<div>Table S1 lists 101 targeted genes.</div><div>Table S2 lists 63 testable genes for multiple test...

Additional file 3: of CRISPR-induced exon skipping is dependent on premature termination codon mutations

Tingting Sui (1383423)
Yuning Song (1383429)
Zhiquan Liu (2558917)
Mao Chen (92698)
Jichao Deng (5228960)
Yuanyuan Xu (163995)
Liangxue Lai (351702)
Zhanjun Li (470605)

October 2018

Table S1. Examples according to the published reports on CRISPR/Cas9-induce exon-skipping and the ca...

Supplemental Material for Macaisne, Kessler, and Yanowitz, 2018

Nicolas Macaisne (5747339)
Zebulin Kessler (5747338)
Judith Yanowitz (5747341)

September 2018

Supplemental Figures S1 - S6Supplemental Table S1 contains list of all the strains usedSupplemental ...

Additional file 1: of Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing

Tao Guo (126667)
Yi-Li Feng (5875118)
Jing-Jing Xiao (5875124)
Qian Liu (135614)
Xiu-Na Sun (4869958)
Ji-Feng Xiang (5875130)
Na Kong (1462714)
Si-Cheng Liu (5875133)
Guo-Qiao Chen (5875136)
Yue Wang (65477)
Meng-Meng Dong (5875139)
Zhen Cai (576458)
Hui Lin (161703)
Xiu-Jun Cai (334256)
An-Yong Xie (5875145)

October 2018

Table S1. The frequencies of accurate NHEJ in repair of Cas9-induced DSBs. Table S2. Top five group ...

Additional file 1: of CRISPR/Cas9 Knockout Strategies to Ablate CCAT1 lncRNA Gene in Cancer Cells

Khadijeh Zare (5920046)
Milad Shademan (5920049)
Mohammad Ghahramani Seno (5920052)
Hesam Dehghani (364952)

November 2018

Figure S1. PCR validation of CCAT1 knockout cells. PCR amplification of wild-type (w.t.) and knockou...

Supplemental Material for Paul et al., 2018

Matthew Robert Paul (6041039)
Tovah Elise Markowitz (5470166)
Andreas Hochwagen (159466)
Sevinç Ercan (6041042)

December 2018

A collection of tables that detail the strains used and primers used in this study. There is also t...

Additional file 1: of Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

Emanuel Gonรงalves (5626652)
Fiona Behan (5626649)
Sandra Louzada (188636)
Damien Arnol (1403572)
Euan Stronach (5626676)
Fengtang Yang (45334)
Kosuke Yusa (3175638)
Oliver Stegle (170916)
Francesco Iorio (408438)
Mathew Garnett (408439)

February 2019

Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...

Supplemental Material for Champer et al., 2019

Jackson Champer (6509158)
Zhaoxin Wen (6509155)
Anisha Luthra (6509165)
Riona Reeves (6509163)
Joan Chung (6509169)
Chen Liu (6509171)
Yoo Lim Lee (6509174)
Jingxian Liu (6509175)
Emily Yang (6509176)
Philipp W. Messer (6509179)
Andrew G. Clark (6509181)

March 2019

Data S1-S6 of "CRISPR gene drive efficiency and resistance rate is highly heritable with no common g...

Additional file 14: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

Gemma Codner (3407399)
Joffrey MiannĂŠ (3407429)
Adam Caulder (3407402)
Jorik Loeffler (5431574)
Rachel Fell (5431583)
Ruairidh King (5431589)
Alasdair Allan (5431595)
Matthew Mackenzie (5431592)
Fran Pike (5431568)
Christopher McCabe (206680)
Skevoulla Christou (5431577)
Sam Joynson (5431580)
Marie Hutchison (3578627)
Michelle Stewart (618852)
Saumya Kumar (530117)
Michelle Simon (530116)
Loranne Agius (2527249)
Quentin Anstee (5431571)
Kirill Volynski (5431598)
Dimitri Kullmann (5431586)
Sara Wells (106305)
Lydia Teboul (106309)

June 2018

Figure S13. Unexpected outcome of CRISPR/Cas9-aided mutagenesis. The figure illustrates an example o...

Supplemental Material for Au et al., 2018

Abstract

Extracted data

Supplemental Material for Au et al., 2018

Abstract

Extracted data

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