Additional file 1: of Highly sensitive detection of ALK resistance mutations in plasma using droplet digital PCR

Additional file 1: of The oncoprotein TBX3 is controlling severity in experimental arthritis

Samra Sardar (6197525)
Alish Kerr (6197528)
DaniĂŤlle Vaartjes (6197531)
Emilie Moltved (6197534)
Edita Karosiene (5392358)
Ramneek Gupta (437350)
Ăsa Andersson (6197537)

January 2019

Table S1. List of primers used for genotyping of mice. Table S2. List of primers for Tbx3 and Tbx5 s...

Additional file 2: Table S1. of Screening of WT1 mutations in exon 8 and 9 in children with steroid resistant nephrotic syndrome from a single centre and establishment of a rapid screening assay using high-resolution melting analysis in a clinical setting

Annes Siji (3627302)
Varsha Pardeshi (3627296)
Shilpa Ravindran (3627299)
Ambily Vasudevan (3627293)
Anil Vasudevan (2537497)

January 2017

Summary of the properties of High Resolution Melt and Direct sequencing. (DOCX 12Â kb

Additional file 5: of Tag-based next generation sequencing: a feasible and reliable assay for EGFR T790M mutation detection in circulating tumor DNA of non small cell lung cancer patients

Mariella Dono (529161)
Giuseppa De Luca (6643022)
Sonia Lastraioli (6643025)
Giorgia Anselmi (6643028)
Maria Dal Bello (6643031)
Simona Coco (673158)
Irene Vanni (3487904)
Francesco Grossi (371982)
Antonella Vigani (6643034)
Carlo Genova (3487901)
Manlio Ferrarini (207820)
Jean Ravetti (6643037)
Simona Zupo (529162)

April 2019

Figure S1. Correlation between amount of total cfDNA yields (pg/mL) and EGFR-activating mutated alle...

Additional file 2: of Highly sensitive detection of ALK resistance mutations in plasma using droplet digital PCR

Ryohei Yoshida (5990975)
Takaaki Sasaki (1277619)
Yasuhiro Umekage (5990978)
Sachie Tanno (5990981)
Yusuke Ono (149099)
Munehiko Ogata (5990984)
Shinichi Chiba (5990987)
Yusuke Mizukami (254859)
Yoshinobu Ohsaki (5990990)

November 2018

Figure S1. Sensitivity and specificity of mutant specific assay for the ALK G1202R mutation. (A) Ch1...

Additional file 1: of Microfluidics-based immunofluorescence for fast staining of ALK in lung adenocarcinoma

Saška Brajkovic (3124191)
Benjamin Pelz (5863985)
Maria-Giuseppina Procopio (5863988)
Anne-Laure Leblond (800296)
Grégoire Repond (5864000)
Ariane Schaub-Clerigué (5864009)
Diego Dupouy (5864012)
Alex Soltermann (112737)

October 2018

Figure S1. Evaluation of different blocking solution for ALK IF. Figure S2. Evaluation of two differ...

Additional file 1: of Metastatic EML4-ALK fusion detected by circulating DNA genotyping in an EGFR-mutated NSCLC patient and successful management by adding ALK inhibitors: a case report

Wenhua Liang (110687)
Qihua He (644192)
Ying Chen (9697)
Shaokun Chuai (3461684)
Weiqiang Yin (3461687)
Wei Wang (17594)
Guilin Peng (3461690)
Caicun Zhou (300936)
Jianxing He (474805)

February 2016

Platform and Gene-list for the Multiplex Genotyping of Circulating Tumor DNA. (DOC 45 kb

Additional file 1: of Molecular tumor analysis and liquid biopsy: a feasibility investigation analyzing circulating tumor DNA in patients with central nervous system lymphomas

Anne-Katrin Hickmann (6417677)
Maximilian Frick (6417680)
Dirk Hadaschik (216162)
Florian Battke (139089)
Markus Bittl (6417683)
Oliver Ganslandt (290208)
Saskia Biskup (40279)
Dennis Döcker (4831767)

March 2019

Supplemental digital content: 1. Genes covered in the TUM01 NGS tumor panel: list of all genes cover...

Additional file 1: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

The nucleotide variations, indicated by the red crosses, between the designed target-specific primer...

Additional file 1: of Duplex fluorescence melting curve analysis as a new tool for rapid detection and differentiation of genotype I, II and Bartha-K61 vaccine strains of pseudorabies virus

Zhicheng Liu (587903)
Chunhong Zhang (1887235)
Haiyan Shen (6021257)
Junying Sun (443988)
Jianfeng Zhang (219107)

November 2018

Sensitivity of the duplex FMCA method. Melting curves from duplex FMCA with recombinant control plas...

Additional file 1: of Extracellular vesicle-derived DNA for performing EGFR genotyping of NSCLC patients

Jae Hur (1466698)
Hee Kim (2025640)
Jong Lee (3448640)
Chang-Min Choi (493779)
Jae Lee (2975361)
Min Jung (4802424)
Chan Pack (4802421)
Kye Lee (4802418)

January 2018

Materials and methods. Table S1. Patient demographics and clinical characteristics. Table S2. Concen...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 1: of A Medium-Throughput Single Cell CRISPR-Cas9 Assay to Assess Gene Essentiality

A. Grassian (3458906)
T. Scales (3458924)
S. Knutson (3458918)
K. Kuntz (3458930)
N. McCarthy (3458927)
C. Lowe (3458933)
J. Moore (3458921)
R. Copeland (3458915)
H. Keilhack (3458912)
J. Smith (6196)
J. Wickenden (3458909)
S. Ribich (3458903)

November 2015

Figure S1. Data relating to EPZ007210. Table S1. Verification that the cell lines used in the assay ...

Additional file 3: of Molecular tumor analysis and liquid biopsy: a feasibility investigation analyzing circulating tumor DNA in patients with central nervous system lymphomas

Anne-Katrin Hickmann (6417677)
Maximilian Frick (6417680)
Dirk Hadaschik (216162)
Florian Battke (139089)
Markus Bittl (6417683)
Oliver Ganslandt (290208)
Saskia Biskup (40279)
Dennis DĂścker (4831773)

March 2019

Figure S2. ddPCR Assays optimization (tumor). DNA from the respective tumor tissue was used as input...

Additional file 1: of Mutational profiling of acute lymphoblastic leukemia with testicular relapse

Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Anand Mayakonda (3811108)
Kar-Tong Tan (3811105)
Wenwen Chien (3811111)
De-Chen Lin (3811117)
Yan-Yi Jiang (648365)
Liang Xu (102656)
Manoj Garg (494661)
Zhen-Tang Lao (3811120)
Michael Lill (3811102)
Henry Yang (204980)
Allen Yeoh (3556511)
H. Koeffler (3586466)

March 2017

Table S1. Variant allele frequency (VAF) of somatic mutations in both cases. (DOCX 24Â kb

Additional file 1: of Analytic and clinical validity of thyroid nodule mutational profiling using droplet digital polymerase chain reaction

Vincent Biron (3761842)
Ashlee Matkin (5783771)
Morris Kostiuk (3761839)
Jordana Williams (5783774)
David Cote (3761833)
Jeffrey Harris (3478718)
Hadi Seikaly (3761239)
Daniel OâConnell (3761251)

September 2018

Figure S1. Identification of BRAF and RAS mutations by ddPCR. Two-dimensional data outputs showing a...

Additional file 1: of The oncoprotein TBX3 is controlling severity in experimental arthritis

Samra Sardar (6197525)
Alish Kerr (6197528)
DaniĂŤlle Vaartjes (6197531)
Emilie Moltved (6197534)
Edita Karosiene (5392358)
Ramneek Gupta (437350)
Ăsa Andersson (6197537)

January 2019

Table S1. List of primers used for genotyping of mice. Table S2. List of primers for Tbx3 and Tbx5 s...

Additional file 2: Table S1. of Screening of WT1 mutations in exon 8 and 9 in children with steroid resistant nephrotic syndrome from a single centre and establishment of a rapid screening assay using high-resolution melting analysis in a clinical setting

Annes Siji (3627302)
Varsha Pardeshi (3627296)
Shilpa Ravindran (3627299)
Ambily Vasudevan (3627293)
Anil Vasudevan (2537497)

January 2017

Summary of the properties of High Resolution Melt and Direct sequencing. (DOCX 12Â kb

Additional file 5: of Tag-based next generation sequencing: a feasible and reliable assay for EGFR T790M mutation detection in circulating tumor DNA of non small cell lung cancer patients

Mariella Dono (529161)
Giuseppa De Luca (6643022)
Sonia Lastraioli (6643025)
Giorgia Anselmi (6643028)
Maria Dal Bello (6643031)
Simona Coco (673158)
Irene Vanni (3487904)
Francesco Grossi (371982)
Antonella Vigani (6643034)
Carlo Genova (3487901)
Manlio Ferrarini (207820)
Jean Ravetti (6643037)
Simona Zupo (529162)

April 2019

Figure S1. Correlation between amount of total cfDNA yields (pg/mL) and EGFR-activating mutated alle...

Additional file 2: of Highly sensitive detection of ALK resistance mutations in plasma using droplet digital PCR

Ryohei Yoshida (5990975)
Takaaki Sasaki (1277619)
Yasuhiro Umekage (5990978)
Sachie Tanno (5990981)
Yusuke Ono (149099)
Munehiko Ogata (5990984)
Shinichi Chiba (5990987)
Yusuke Mizukami (254859)
Yoshinobu Ohsaki (5990990)

November 2018

Figure S1. Sensitivity and specificity of mutant specific assay for the ALK G1202R mutation. (A) Ch1...

Additional file 1: of Microfluidics-based immunofluorescence for fast staining of ALK in lung adenocarcinoma

Saška Brajkovic (3124191)
Benjamin Pelz (5863985)
Maria-Giuseppina Procopio (5863988)
Anne-Laure Leblond (800296)
Grégoire Repond (5864000)
Ariane Schaub-Clerigué (5864009)
Diego Dupouy (5864012)
Alex Soltermann (112737)

October 2018

Figure S1. Evaluation of different blocking solution for ALK IF. Figure S2. Evaluation of two differ...

Additional file 1: of Metastatic EML4-ALK fusion detected by circulating DNA genotyping in an EGFR-mutated NSCLC patient and successful management by adding ALK inhibitors: a case report

Wenhua Liang (110687)
Qihua He (644192)
Ying Chen (9697)
Shaokun Chuai (3461684)
Weiqiang Yin (3461687)
Wei Wang (17594)
Guilin Peng (3461690)
Caicun Zhou (300936)
Jianxing He (474805)

February 2016

Platform and Gene-list for the Multiplex Genotyping of Circulating Tumor DNA. (DOC 45 kb

Additional file 1: of Molecular tumor analysis and liquid biopsy: a feasibility investigation analyzing circulating tumor DNA in patients with central nervous system lymphomas

Anne-Katrin Hickmann (6417677)
Maximilian Frick (6417680)
Dirk Hadaschik (216162)
Florian Battke (139089)
Markus Bittl (6417683)
Oliver Ganslandt (290208)
Saskia Biskup (40279)
Dennis Döcker (4831767)

March 2019

Supplemental digital content: 1. Genes covered in the TUM01 NGS tumor panel: list of all genes cover...

Additional file 1: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

The nucleotide variations, indicated by the red crosses, between the designed target-specific primer...

Additional file 1: of Duplex fluorescence melting curve analysis as a new tool for rapid detection and differentiation of genotype I, II and Bartha-K61 vaccine strains of pseudorabies virus

Zhicheng Liu (587903)
Chunhong Zhang (1887235)
Haiyan Shen (6021257)
Junying Sun (443988)
Jianfeng Zhang (219107)

November 2018

Sensitivity of the duplex FMCA method. Melting curves from duplex FMCA with recombinant control plas...

Additional file 1: of Extracellular vesicle-derived DNA for performing EGFR genotyping of NSCLC patients

Jae Hur (1466698)
Hee Kim (2025640)
Jong Lee (3448640)
Chang-Min Choi (493779)
Jae Lee (2975361)
Min Jung (4802424)
Chan Pack (4802421)
Kye Lee (4802418)

January 2018

Materials and methods. Table S1. Patient demographics and clinical characteristics. Table S2. Concen...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 1: of A Medium-Throughput Single Cell CRISPR-Cas9 Assay to Assess Gene Essentiality

A. Grassian (3458906)
T. Scales (3458924)
S. Knutson (3458918)
K. Kuntz (3458930)
N. McCarthy (3458927)
C. Lowe (3458933)
J. Moore (3458921)
R. Copeland (3458915)
H. Keilhack (3458912)
J. Smith (6196)
J. Wickenden (3458909)
S. Ribich (3458903)

November 2015

Figure S1. Data relating to EPZ007210. Table S1. Verification that the cell lines used in the assay ...

Additional file 3: of Molecular tumor analysis and liquid biopsy: a feasibility investigation analyzing circulating tumor DNA in patients with central nervous system lymphomas

Anne-Katrin Hickmann (6417677)
Maximilian Frick (6417680)
Dirk Hadaschik (216162)
Florian Battke (139089)
Markus Bittl (6417683)
Oliver Ganslandt (290208)
Saskia Biskup (40279)
Dennis DĂścker (4831773)

March 2019

Figure S2. ddPCR Assays optimization (tumor). DNA from the respective tumor tissue was used as input...

Additional file 1: of Mutational profiling of acute lymphoblastic leukemia with testicular relapse

Ling-Wen Ding (3811114)
Qiao-Yang Sun (3811123)
Anand Mayakonda (3811108)
Kar-Tong Tan (3811105)
Wenwen Chien (3811111)
De-Chen Lin (3811117)
Yan-Yi Jiang (648365)
Liang Xu (102656)
Manoj Garg (494661)
Zhen-Tang Lao (3811120)
Michael Lill (3811102)
Henry Yang (204980)
Allen Yeoh (3556511)
H. Koeffler (3586466)

March 2017

Table S1. Variant allele frequency (VAF) of somatic mutations in both cases. (DOCX 24Â kb

Additional file 1: of Analytic and clinical validity of thyroid nodule mutational profiling using droplet digital polymerase chain reaction

Vincent Biron (3761842)
Ashlee Matkin (5783771)
Morris Kostiuk (3761839)
Jordana Williams (5783774)
David Cote (3761833)
Jeffrey Harris (3478718)
Hadi Seikaly (3761239)
Daniel OâConnell (3761251)

September 2018

Figure S1. Identification of BRAF and RAS mutations by ddPCR. Two-dimensional data outputs showing a...

Additional file 1: of The oncoprotein TBX3 is controlling severity in experimental arthritis

Samra Sardar (6197525)
Alish Kerr (6197528)
DaniĂŤlle Vaartjes (6197531)
Emilie Moltved (6197534)
Edita Karosiene (5392358)
Ramneek Gupta (437350)
Ăsa Andersson (6197537)

January 2019

Table S1. List of primers used for genotyping of mice. Table S2. List of primers for Tbx3 and Tbx5 s...

Additional file 2: Table S1. of Screening of WT1 mutations in exon 8 and 9 in children with steroid resistant nephrotic syndrome from a single centre and establishment of a rapid screening assay using high-resolution melting analysis in a clinical setting

Annes Siji (3627302)
Varsha Pardeshi (3627296)
Shilpa Ravindran (3627299)
Ambily Vasudevan (3627293)
Anil Vasudevan (2537497)

January 2017

Summary of the properties of High Resolution Melt and Direct sequencing. (DOCX 12Â kb

Additional file 5: of Tag-based next generation sequencing: a feasible and reliable assay for EGFR T790M mutation detection in circulating tumor DNA of non small cell lung cancer patients

Mariella Dono (529161)
Giuseppa De Luca (6643022)
Sonia Lastraioli (6643025)
Giorgia Anselmi (6643028)
Maria Dal Bello (6643031)
Simona Coco (673158)
Irene Vanni (3487904)
Francesco Grossi (371982)
Antonella Vigani (6643034)
Carlo Genova (3487901)
Manlio Ferrarini (207820)
Jean Ravetti (6643037)
Simona Zupo (529162)

April 2019

Figure S1. Correlation between amount of total cfDNA yields (pg/mL) and EGFR-activating mutated alle...

Additional file 1: of Highly sensitive detection of ALK resistance mutations in plasma using droplet digital PCR

Abstract

Extracted data

Additional file 1: of Highly sensitive detection of ALK resistance mutations in plasma using droplet digital PCR

Abstract

Extracted data

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