Additional file 3: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Additional file 4: of Porcine circovirus type 2 ORF3 protein induces apoptosis in melanoma cells

Marina Teras (6067532)
Edda Viisileht (6067535)
Merlis Pahtma-Hall (6067538)
Airi Rump (6067541)
Viiu Paalme (354377)
Pille Pata (2566039)
Illar Pata (72940)
Christelle Langevin (158990)
Sirje RĂźĂźtel Boudinot (6067544)

December 2018

Figure S3. PCV2 ORF3 intracellular expression pattern in porcine PBMC. The intracellular localizatio...

Additional file 1: of Development and application of a baculovirus-expressed capsid protein-based indirect ELISA for detection of porcine circovirus 3 IgG antibodies

Sujiao Zhang (6431471)
Dongliang Wang (418198)
Yifan Jiang (3334950)
Zhoumian Li (6431480)
Yawen Zou (5559026)
Meng Li (79487)
Haoyang Yu (538882)
Kun Huang (136241)
Yi Yang (116183)
Naidong Wang (4725801)

March 2019

Figure S1. Comparative sequences alignment of the PCV3 Cap. Figure S2. Indirect fluorescence assay (...

Additional file 2: of Genome-wide analysis of differentially expressed profiles of mRNAs, lncRNAs and circRNAs during Cryptosporidium baileyi infection

Guan-Jing Ren (5206190)
Xian-Cheng Fan (5206184)
Ting-Li Liu (5206187)
Sha-Sha Wang (1819615)
Guang-Hui Zhao (209796)

May 2018

All the differentially expressed mRNAs, lncRNAs and circRNAs in this study. (XLSX 150Â kb

Additional file 1: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

GO biological process term enrichment of every gene set in PorSignDB. (XLSX 662Â kb

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 9: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

STAT3 is a host factor in PCV2 disease. A Core genes responsible for the STAT3 signature enrichment ...

Additional file 8: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PMWS biomarker genes annotation and performance of an alternative clinical disease signature. A Gene...

Additional file 2: of Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages

Marzieh Mirhashemi (4954000)
Farzad Noubary (306532)
Susan Chapman-Bonofiglio (4954003)
Saul Tzipori (37482)
Gordon Huggins (3447329)
Giovanni Widmer (773110)

March 2018

Figure S2. Micrographs of immunofluorescently labelled infected (left) and control monolayers of IPE...

Additional file 1: of Genetic analysis of porcine circovirus type 2 (PCV2) strains between 2002 and 2016 reveals PCV2 mutant predominating in porcine population in Guangxi, China

Jing Yao (169854)
Yanran Qin (6636953)
Yue Zeng (384153)
Kang Ouyang (529764)
Ying Chen (9697)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

April 2019

Phylogenetic tree based on PCV2 ORF2 sequences. Phylogenetic tree based on a comparison of 129 PCV2 ...

Additional file 2: of A proteomic approach to the development of DIVA ELISA distinguishing pigs infected with Salmonella Typhimurium and pigs vaccinated with a Salmonella Typhimurium-based inactivated vaccine

Jan Gebauer (3530429)
Hana Kudlackova (3530432)
Marcel Kosina (3530441)
Kamil Kovarcik (3530420)
Radek Tesarik (3530426)
Alena Osvaldova (3530438)
Martin Faldyna (3530423)
Jan Matiasovic (3530435)

November 2016

Identified Salmonella proteins from different media. Mass spectrometry identification of Salmonella ...

Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

Xuelian Ma (5852510)
Xiaomin Zhao (566041)
Zhichao Zhang (530603)
Jianxiong Guo (4571830)
Lijuan Guan (3740323)
Juejun Li (5852513)
Mi Mi (5852516)
Yong Huang (15745)
Dewen Tong (93139)

October 2018

Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed informa...

Additional file 1: of Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages

Marzieh Mirhashemi (4954000)
Farzad Noubary (306532)
Susan Chapman-Bonofiglio (4954003)
Saul Tzipori (37482)
Gordon Huggins (3447329)
Giovanni Widmer (773110)

March 2018

Figure S1. S. scrofa FPKM values from two replicate cell cultures infected with C. parvum (correlati...

Additional file 2: of Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources

Suchawan Pornsukarom (3226743)
Arnoud van Vliet (5940479)
Siddhartha Thakur (137473)

November 2018

Table S1. Salmonella isolates that were sequenced and constructed for this research. Table S2. AMR, ...

Additional file 1: of Revisiting the taxonomical classification of Porcine Circovirus type 2 (PCV2): still a real challenge

Giovanni Franzo (3574259)
MartĂ Cortey (3574253)
Alex Olvera (3343655)
Dinko Novosel (3574241)
Alessandra De Castro (3574256)
Philippe Biagini (3574250)
Joaquim SegalĂŠs (3574244)
Michele Drigo (3574247)

August 2015

Spreadsheet containing the datasets used in the present study. For ORF2, the clustering according to...

Additional file 2: Figure S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Martine Schroyen (3570095)
Christopher Eisley (3570089)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Igseo Choi (3570098)
Graham Plastow (174335)
Leluo Guan (2833298)
Paul Stothard (5814)
Hua Bao (544715)
Arun Kommadath (218634)
James Reecy (3561878)
Joan Lunney (3570092)
Robert Rowland (2223292)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

March 2016

Correlation plots of BE3D cluster 3 log2FC values of transcripts in PHGC3 and PHGC5. PHGC3 was the c...

Additional file 4: of Porcine circovirus type 2 ORF3 protein induces apoptosis in melanoma cells

Marina Teras (6067532)
Edda Viisileht (6067535)
Merlis Pahtma-Hall (6067538)
Airi Rump (6067541)
Viiu Paalme (354377)
Pille Pata (2566039)
Illar Pata (72940)
Christelle Langevin (158990)
Sirje RĂźĂźtel Boudinot (6067544)

December 2018

Figure S3. PCV2 ORF3 intracellular expression pattern in porcine PBMC. The intracellular localizatio...

Additional file 1: of Development and application of a baculovirus-expressed capsid protein-based indirect ELISA for detection of porcine circovirus 3 IgG antibodies

Sujiao Zhang (6431471)
Dongliang Wang (418198)
Yifan Jiang (3334950)
Zhoumian Li (6431480)
Yawen Zou (5559026)
Meng Li (79487)
Haoyang Yu (538882)
Kun Huang (136241)
Yi Yang (116183)
Naidong Wang (4725801)

March 2019

Figure S1. Comparative sequences alignment of the PCV3 Cap. Figure S2. Indirect fluorescence assay (...

Additional file 2: of Genome-wide analysis of differentially expressed profiles of mRNAs, lncRNAs and circRNAs during Cryptosporidium baileyi infection

Guan-Jing Ren (5206190)
Xian-Cheng Fan (5206184)
Ting-Li Liu (5206187)
Sha-Sha Wang (1819615)
Guang-Hui Zhao (209796)

May 2018

All the differentially expressed mRNAs, lncRNAs and circRNAs in this study. (XLSX 150Â kb

Additional file 1: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

GO biological process term enrichment of every gene set in PorSignDB. (XLSX 662Â kb

Additional file 6: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PorSignDB performance in lymph nodes of PMWS pigs VS healthy pigs. Figure displays enriched PorSignD...

Additional file 9: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

STAT3 is a host factor in PCV2 disease. A Core genes responsible for the STAT3 signature enrichment ...

Additional file 8: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Nicolaas Van Renne (4967131)
Ruifang Wei (4625599)
Nathalie Pochet (150518)
Hans Nauwynck (533091)

November 2018

PMWS biomarker genes annotation and performance of an alternative clinical disease signature. A Gene...

Additional file 2: of Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages

Marzieh Mirhashemi (4954000)
Farzad Noubary (306532)
Susan Chapman-Bonofiglio (4954003)
Saul Tzipori (37482)
Gordon Huggins (3447329)
Giovanni Widmer (773110)

March 2018

Figure S2. Micrographs of immunofluorescently labelled infected (left) and control monolayers of IPE...

Additional file 1: of Genetic analysis of porcine circovirus type 2 (PCV2) strains between 2002 and 2016 reveals PCV2 mutant predominating in porcine population in Guangxi, China

Jing Yao (169854)
Yanran Qin (6636953)
Yue Zeng (384153)
Kang Ouyang (529764)
Ying Chen (9697)
Weijian Huang (6540149)
Zuzhang Wei (5346992)

April 2019

Phylogenetic tree based on PCV2 ORF2 sequences. Phylogenetic tree based on a comparison of 129 PCV2 ...

Additional file 2: of A proteomic approach to the development of DIVA ELISA distinguishing pigs infected with Salmonella Typhimurium and pigs vaccinated with a Salmonella Typhimurium-based inactivated vaccine

Jan Gebauer (3530429)
Hana Kudlackova (3530432)
Marcel Kosina (3530441)
Kamil Kovarcik (3530420)
Radek Tesarik (3530426)
Alena Osvaldova (3530438)
Martin Faldyna (3530423)
Jan Matiasovic (3530435)

November 2016

Identified Salmonella proteins from different media. Mass spectrometry identification of Salmonella ...

Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

Xuelian Ma (5852510)
Xiaomin Zhao (566041)
Zhichao Zhang (530603)
Jianxiong Guo (4571830)
Lijuan Guan (3740323)
Juejun Li (5852513)
Mi Mi (5852516)
Yong Huang (15745)
Dewen Tong (93139)

October 2018

Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed informa...

Additional file 1: of Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages

Marzieh Mirhashemi (4954000)
Farzad Noubary (306532)
Susan Chapman-Bonofiglio (4954003)
Saul Tzipori (37482)
Gordon Huggins (3447329)
Giovanni Widmer (773110)

March 2018

Figure S1. S. scrofa FPKM values from two replicate cell cultures infected with C. parvum (correlati...

Additional file 2: of Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources

Suchawan Pornsukarom (3226743)
Arnoud van Vliet (5940479)
Siddhartha Thakur (137473)

November 2018

Table S1. Salmonella isolates that were sequenced and constructed for this research. Table S2. AMR, ...

Additional file 1: of Revisiting the taxonomical classification of Porcine Circovirus type 2 (PCV2): still a real challenge

Giovanni Franzo (3574259)
MartĂ Cortey (3574253)
Alex Olvera (3343655)
Dinko Novosel (3574241)
Alessandra De Castro (3574256)
Philippe Biagini (3574250)
Joaquim SegalĂŠs (3574244)
Michele Drigo (3574247)

August 2015

Spreadsheet containing the datasets used in the present study. For ORF2, the clustering according to...

Additional file 2: Figure S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Martine Schroyen (3570095)
Christopher Eisley (3570089)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Igseo Choi (3570098)
Graham Plastow (174335)
Leluo Guan (2833298)
Paul Stothard (5814)
Hua Bao (544715)
Arun Kommadath (218634)
James Reecy (3561878)
Joan Lunney (3570092)
Robert Rowland (2223292)
Jack Dekkers (3439892)
Christopher Tuggle (3439895)

March 2016

Correlation plots of BE3D cluster 3 log2FC values of transcripts in PHGC3 and PHGC5. PHGC3 was the c...

Additional file 4: of Porcine circovirus type 2 ORF3 protein induces apoptosis in melanoma cells

Marina Teras (6067532)
Edda Viisileht (6067535)
Merlis Pahtma-Hall (6067538)
Airi Rump (6067541)
Viiu Paalme (354377)
Pille Pata (2566039)
Illar Pata (72940)
Christelle Langevin (158990)
Sirje RĂźĂźtel Boudinot (6067544)

December 2018

Figure S3. PCV2 ORF3 intracellular expression pattern in porcine PBMC. The intracellular localizatio...

Additional file 1: of Development and application of a baculovirus-expressed capsid protein-based indirect ELISA for detection of porcine circovirus 3 IgG antibodies

Sujiao Zhang (6431471)
Dongliang Wang (418198)
Yifan Jiang (3334950)
Zhoumian Li (6431480)
Yawen Zou (5559026)
Meng Li (79487)
Haoyang Yu (538882)
Kun Huang (136241)
Yi Yang (116183)
Naidong Wang (4725801)

March 2019

Figure S1. Comparative sequences alignment of the PCV3 Cap. Figure S2. Indirect fluorescence assay (...

Additional file 2: of Genome-wide analysis of differentially expressed profiles of mRNAs, lncRNAs and circRNAs during Cryptosporidium baileyi infection

Guan-Jing Ren (5206190)
Xian-Cheng Fan (5206184)
Ting-Li Liu (5206187)
Sha-Sha Wang (1819615)
Guang-Hui Zhao (209796)

May 2018

All the differentially expressed mRNAs, lncRNAs and circRNAs in this study. (XLSX 150Â kb

Additional file 3: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Abstract

Extracted data

Additional file 3: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

Abstract

Extracted data

Related items

Related items