Additional file 3: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Additional file 7 of GeneSurrounder: network-based identification of disease genes in expression data

Sahil Shah (480436)
Rosemary Braun (217862)

May 2019

More detail on results of applying Gene Surroundeer to the Bladder Cancer Data. (PDF 117 kb

Additional file 1: of The impact of pharmacokinetic gene profiles across human cancers

Michael Zimmermann (203279)
Terry Therneau (5245403)
Jean-Pierre Kocher (179225)

May 2018

PK gene profiles across human cancers. This file contains additional text and figures that support t...

Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

RNAi models. Excel table containing statistically significant predictive models found using the RNAi...

Additional file 2: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The significant (associated with kidney cancer) genes only detected by knnAUC. (XLSX 16 kb

Additional file 1: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The power comparison of simulation study across different variance levels. (XLSX 14 kb

Additional file 4: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The recalculated (100 times) simulation power of knnAUC with default parameters in nine simple funct...

Additional file 2: of Efficient test for nonlinear dependence of two continuous variables

Yi Wang (32470)
Yi Li (1144)
Hongbao Cao (137526)
Momiao Xiong (86978)
Yin Shugart (3453161)
Li Jin (40265)

August 2015

The significant (associated with kidney cancer) genes only detected by other methods (not including ...

Additional file 3: of A positive feed-forward loop between LncRNA-URRCC and EGFL7/P-AKT/FOXO3 signaling promotes proliferation and metastasis of clear cell renal cell carcinoma

Wei Zhai (1976914)
Rujian Zhu (6561458)
Junjie Ma (730463)
Dongkui Gong (5957279)
Haimin Zhang (1423264)
Jin Zhang (53297)
Yonghui Chen (23872)
Yiran Huang (1450759)
Junhua Zheng (500332)
Wei Xue (219900)

April 2019

Figure S1. A: Flow chart of selecting dysregulated lncRNAs from two public RCC Dataset (GSE46699 and...

Additional file 1 of Ensemble outlier detection and gene selection in triple-negative breast cancer data

Marta Lopes (2963280)
AndrĂŠ VerĂssimo (3505625)
Eunice Carrasquinha (5176910)
Sandra Casimiro (413131)
Niko Beerenwinkel (54419)
Susana Vinga (40513)

May 2018

Ensemble outlier detection and gene selection in triple-negative breast cancer data. (XLSX 4010 kb

Additional file 1 of Exploration of the role of Cuproptosis genes and their related long non-coding RNA in clear cell renal cell carcinoma: a comprehensive bioinformatics study

Dian Xia (8466426)
Qi Liu (33068)
Wen Jiao (7199180)
Longfei Peng (6947990)
Qi Wang (22418)
ZhouTing Tuo (14067889)
Liangkuan Bi (467982)

November 2022

Additional file 1: Supplementary Figure 1. Kaplan-Meiercurves of OS differences stratified by age, g...

Additional file 3: of The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana (6173975)
Joel Nulsen (6173978)
Lisa Dressler (6173981)
Michele Bortolomeazzi (6173984)
Santhilata Venkata (6173987)
Aikaterini Tourna (6173990)
Anna Yakovleva (778118)
Tommaso Palmieri (6173993)
Francesca Ciccarelli (6173996)

January 2019

Lists of all cancer genes, known cancer genes, and candidate cancer genes. (XLSX 840 kb

Additional file 1: of mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics

Argiris Sakellariou (3438239)
George Spyrou (482158)

September 2015

Package âmAPKL_1.1.1.tar.gzâ including source code, documentation. (GZ 1979 kb

Additional file 1: of GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data

Nathan Harmston (3565727)
Elizabeth Ing-Simmons (3565733)
Malcolm Perry (3565730)
Anja BareĹĄiÄ (3565736)
Boris Lenhard (2088)

November 2015

R script used to generate figures, tables and numbers used in the described analysis of Hi-C data. (...

Additional file 2: of Integrating heterogeneous genomic data to accurately identify disease subtypes

Xianwen Ren (115483)
Hua Fu (178428)
Qi Jin (12159)

November 2015

Heatmaps of patient similarity for kidney cancer. The similarity scores were measured by the Pearson...

Additional file 3: of An ecological measure of immune-cancer colocalization as a prognostic factor for breast cancer

Carlo Maley (3309672)
Konrad Koelble (3554393)
Rachael Natrajan (265328)
Athena Aktipis (3554390)
Yinyin Yuan (225403)

September 2015

Sweave file. R code used for reproducing all results presented in the paper. (PDF 600 kb

Additional file 7 of GeneSurrounder: network-based identification of disease genes in expression data

Sahil Shah (480436)
Rosemary Braun (217862)

May 2019

More detail on results of applying Gene Surroundeer to the Bladder Cancer Data. (PDF 117 kb

Additional file 1: of The impact of pharmacokinetic gene profiles across human cancers

Michael Zimmermann (203279)
Terry Therneau (5245403)
Jean-Pierre Kocher (179225)

May 2018

PK gene profiles across human cancers. This file contains additional text and figures that support t...

Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

RNAi models. Excel table containing statistically significant predictive models found using the RNAi...

Additional file 2: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The significant (associated with kidney cancer) genes only detected by knnAUC. (XLSX 16 kb

Additional file 1: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The power comparison of simulation study across different variance levels. (XLSX 14 kb

Additional file 4: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Yi Li (1144)
Xiaoyu Liu (206872)
Yanyun Ma (339117)
Yi Wang (32470)
Weichen Zhou (6004454)
Meng Hao (6004457)
Zhenghong Yuan (12153)
Jie Liu (15128)
Momiao Xiong (86978)
Yin Shugart (3453161)
Jiucun Wang (102740)
Li Jin (40265)

November 2018

The recalculated (100 times) simulation power of knnAUC with default parameters in nine simple funct...

Additional file 2: of Efficient test for nonlinear dependence of two continuous variables

Yi Wang (32470)
Yi Li (1144)
Hongbao Cao (137526)
Momiao Xiong (86978)
Yin Shugart (3453161)
Li Jin (40265)

August 2015

The significant (associated with kidney cancer) genes only detected by other methods (not including ...

Additional file 3: of A positive feed-forward loop between LncRNA-URRCC and EGFL7/P-AKT/FOXO3 signaling promotes proliferation and metastasis of clear cell renal cell carcinoma

Wei Zhai (1976914)
Rujian Zhu (6561458)
Junjie Ma (730463)
Dongkui Gong (5957279)
Haimin Zhang (1423264)
Jin Zhang (53297)
Yonghui Chen (23872)
Yiran Huang (1450759)
Junhua Zheng (500332)
Wei Xue (219900)

April 2019

Figure S1. A: Flow chart of selecting dysregulated lncRNAs from two public RCC Dataset (GSE46699 and...

Additional file 1 of Ensemble outlier detection and gene selection in triple-negative breast cancer data

Marta Lopes (2963280)
AndrĂŠ VerĂssimo (3505625)
Eunice Carrasquinha (5176910)
Sandra Casimiro (413131)
Niko Beerenwinkel (54419)
Susana Vinga (40513)

May 2018

Ensemble outlier detection and gene selection in triple-negative breast cancer data. (XLSX 4010 kb

Additional file 1 of Exploration of the role of Cuproptosis genes and their related long non-coding RNA in clear cell renal cell carcinoma: a comprehensive bioinformatics study

Dian Xia (8466426)
Qi Liu (33068)
Wen Jiao (7199180)
Longfei Peng (6947990)
Qi Wang (22418)
ZhouTing Tuo (14067889)
Liangkuan Bi (467982)

November 2022

Additional file 1: Supplementary Figure 1. Kaplan-Meiercurves of OS differences stratified by age, g...

Additional file 3: of The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Dimitra Repana (6173975)
Joel Nulsen (6173978)
Lisa Dressler (6173981)
Michele Bortolomeazzi (6173984)
Santhilata Venkata (6173987)
Aikaterini Tourna (6173990)
Anna Yakovleva (778118)
Tommaso Palmieri (6173993)
Francesca Ciccarelli (6173996)

January 2019

Lists of all cancer genes, known cancer genes, and candidate cancer genes. (XLSX 840 kb

Additional file 1: of mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics

Argiris Sakellariou (3438239)
George Spyrou (482158)

September 2015

Package âmAPKL_1.1.1.tar.gzâ including source code, documentation. (GZ 1979 kb

Additional file 1: of GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data

Nathan Harmston (3565727)
Elizabeth Ing-Simmons (3565733)
Malcolm Perry (3565730)
Anja BareĹĄiÄ (3565736)
Boris Lenhard (2088)

November 2015

R script used to generate figures, tables and numbers used in the described analysis of Hi-C data. (...

Additional file 2: of Integrating heterogeneous genomic data to accurately identify disease subtypes

Xianwen Ren (115483)
Hua Fu (178428)
Qi Jin (12159)

November 2015

Heatmaps of patient similarity for kidney cancer. The similarity scores were measured by the Pearson...

Additional file 3: of An ecological measure of immune-cancer colocalization as a prognostic factor for breast cancer

Carlo Maley (3309672)
Konrad Koelble (3554393)
Rachael Natrajan (265328)
Athena Aktipis (3554390)
Yinyin Yuan (225403)

September 2015

Sweave file. R code used for reproducing all results presented in the paper. (PDF 600 kb

Additional file 7 of GeneSurrounder: network-based identification of disease genes in expression data

Sahil Shah (480436)
Rosemary Braun (217862)

May 2019

More detail on results of applying Gene Surroundeer to the Bladder Cancer Data. (PDF 117 kb

Additional file 1: of The impact of pharmacokinetic gene profiles across human cancers

Michael Zimmermann (203279)
Terry Therneau (5245403)
Jean-Pierre Kocher (179225)

May 2018

PK gene profiles across human cancers. This file contains additional text and figures that support t...

Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

RNAi models. Excel table containing statistically significant predictive models found using the RNAi...

Additional file 3: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Abstract

Extracted data

Additional file 3: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

Abstract

Extracted data

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