Table_S3 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

sj-csv-6-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-6-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-4-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-4-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-10-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-10-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome St...

Table_S2 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, Table_S2 for LimoRhyde: A Flexible Approach for Differential Analysis of Rhyt...

Table_S4 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, Table_S4 for LimoRhyde: A Flexible Approach for Differential Analysis of Rhyt...

limorhyde_supp – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, limorhyde_supp for LimoRhyde: A Flexible Approach for Differential Analysis o...

Table_S6._Limorhyde_statistics_of_differential_rhythmicity_in_control_and_Achl_RNAi_flies – Supplemental material for Achilles-Mediated and Sex-Specific Regulation of Circadian mRNA Rhythms in Drosophila

Jiajia Li (184267)
Renee Yin Yu (6405743)
Farida Emran (6405746)
Brian E. Chen (6405749)
Michael E. Hughes (149233)

February 2019

Supplemental material, Table_S6._Limorhyde_statistics_of_differential_rhythmicity_in_control_and_Ach...

Supplement_Table_2_Final – Supplemental material for Rapid Response and Slow Recovery of the H3K4me3 Epigenomic Marker in the Liver after Light-mediated Phase Advances of the Circadian Clock

Dmytro Grygoryev (4229731)
Michael R. Rountree (707798)
Furaha Rwatambuga (5374838)
Anna Ohlrich (4229716)
Ayaka Kukino (834996)
Matthew P. Butler (5374841)
Charles N. Allen (449235)
Mitchell S. Turker (266232)

June 2018

Supplemental material, Supplement_Table_2_Final for Rapid Response and Slow Recovery of the H3K4m...

sj-csv-3-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-3-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-9-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-9-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-5-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-5-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

Marzec and Cho et al_Physiol Genomics_Supplementary Tables and Figure

Hye-Youn Cho
Jacqui Marzec
Monica High
Zachary R. McCaw
Fernando Polack
Steven Kleeberger

October 2019

Supplemental Tables S1-S9 and Figure S1 for the manuscript by Marzec and Cho et al submitted to Phys...

sj-csv-7-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-7-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

JBR789536_Supplementary_Figure_captions – Supplemental material for Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data

Alan L. Hutchison (707293)
Ravi Allada (82380)
Aaron R. Dinner (115250)

August 2018

Supplemental material, JBR789536_Supplementary_Figure_captions for Bootstrapping and Empirical Bayes...

sj-csv-2-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-2-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-6-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-6-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-4-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-4-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-10-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-10-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome St...

Table_S2 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, Table_S2 for LimoRhyde: A Flexible Approach for Differential Analysis of Rhyt...

Table_S4 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, Table_S4 for LimoRhyde: A Flexible Approach for Differential Analysis of Rhyt...

limorhyde_supp – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Jordan M. Singer (6008156)
Jacob J. Hughey (290786)

November 2018

Supplemental material, limorhyde_supp for LimoRhyde: A Flexible Approach for Differential Analysis o...

Table_S6._Limorhyde_statistics_of_differential_rhythmicity_in_control_and_Achl_RNAi_flies – Supplemental material for Achilles-Mediated and Sex-Specific Regulation of Circadian mRNA Rhythms in Drosophila

Jiajia Li (184267)
Renee Yin Yu (6405743)
Farida Emran (6405746)
Brian E. Chen (6405749)
Michael E. Hughes (149233)

February 2019

Supplemental material, Table_S6._Limorhyde_statistics_of_differential_rhythmicity_in_control_and_Ach...

Supplement_Table_2_Final – Supplemental material for Rapid Response and Slow Recovery of the H3K4me3 Epigenomic Marker in the Liver after Light-mediated Phase Advances of the Circadian Clock

Dmytro Grygoryev (4229731)
Michael R. Rountree (707798)
Furaha Rwatambuga (5374838)
Anna Ohlrich (4229716)
Ayaka Kukino (834996)
Matthew P. Butler (5374841)
Charles N. Allen (449235)
Mitchell S. Turker (266232)

June 2018

Supplemental material, Supplement_Table_2_Final for Rapid Response and Slow Recovery of the H3K4m...

sj-csv-3-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-3-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-9-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-9-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-5-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-5-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

Marzec and Cho et al_Physiol Genomics_Supplementary Tables and Figure

Hye-Youn Cho
Jacqui Marzec
Monica High
Zachary R. McCaw
Fernando Polack
Steven Kleeberger

October 2019

Supplemental Tables S1-S9 and Figure S1 for the manuscript by Marzec and Cho et al submitted to Phys...

sj-csv-7-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-7-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

JBR789536_Supplementary_Figure_captions – Supplemental material for Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data

Alan L. Hutchison (707293)
Ravi Allada (82380)
Aaron R. Dinner (115250)

August 2018

Supplemental material, JBR789536_Supplementary_Figure_captions for Bootstrapping and Empirical Bayes...

sj-csv-2-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-2-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-6-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-6-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-4-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-4-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome Stu...

sj-csv-10-jbr-10.1177_07487304221134160 – Supplemental material for Sex Inclusion in Transcriptome Studies of Daily Rhythms

Dora Obodo (14171615)
Elliot H. Outland (14171618)
Jacob J. Hughey (8032259)

November 2022

Supplemental material, sj-csv-10-jbr-10.1177_07487304221134160 for Sex Inclusion in Transcriptome St...

Table_S3 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Abstract

Extracted data

Table_S3 – Supplemental material for LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Abstract

Extracted data

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