Included here are the sequence and taxonomy tables as well as the fasta file before mitochondria and chloroplast ASVs were removed (12,479 ASVs). Also included are data for the three samples that were not part of the original analysis.--The taxonomy table (full_tax_table.txt) contains the complete SILVA lineage.--The sequence table (full_seq_table.txt) contains the raw read count for each ASV by sample.--The fasta file (full_ASV.fasta) contains all ASV sequences.Also included here are the same files after removing mitochondria and chloroplast ASVs (trim_tax_table.txt, trim_seq_table.txt, trim_ASV.fasta). </div
There are three sub-directories: PhyloBayes_input, PhyloBayes_output and FastDate_analysis. The whol...
<p>The phyloseq class is an experiment-level data storage class defined by the phyloseq package for ...
Two fasta files containing all arthropod DNA sequences (seqs.fna) and the representative DNA sequenc...
There are three files in the compressed file folder.One Excel file has listed detailed sampling info...
This data file contains all the mitochondrial sequences used in the study Beresford et al. in a fast...
Data from "Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllos...
Phyloseq files for 18S and 16S primers which can easily allow you to access and explore the ASV tabl...
Data including tables (xlsx format), raw sequences (fasta format), raw and trimmed alignments (fasta...
Complete, fully reproducible phyloseq workflow for microbiome analysis of herbivorous reef fish. Inc...
<p>Total sequences are those recovered after quality curation (denoising, trimming, chimera removal,...
This file contains .Fasta files for four mitochondrial genome sequences that had Eudyptes warhami an...
This phylum table was built in QIIME from raref_nG6XN_nchl_filtered_sorted_host_L7.txt. Chloroplast ...
Trimmed alignments for 255 genes and 38 taxa as used for the phylogenomic analysis (see Figure 2A an...
The folder contains the fasta files used to generate the ML phylogenies, the tree files generated, t...
Count table for ASVs generated from DADA2 from raw MiSeq reads. Rows are individual samples and colu...
There are three sub-directories: PhyloBayes_input, PhyloBayes_output and FastDate_analysis. The whol...
<p>The phyloseq class is an experiment-level data storage class defined by the phyloseq package for ...
Two fasta files containing all arthropod DNA sequences (seqs.fna) and the representative DNA sequenc...
There are three files in the compressed file folder.One Excel file has listed detailed sampling info...
This data file contains all the mitochondrial sequences used in the study Beresford et al. in a fast...
Data from "Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllos...
Phyloseq files for 18S and 16S primers which can easily allow you to access and explore the ASV tabl...
Data including tables (xlsx format), raw sequences (fasta format), raw and trimmed alignments (fasta...
Complete, fully reproducible phyloseq workflow for microbiome analysis of herbivorous reef fish. Inc...
<p>Total sequences are those recovered after quality curation (denoising, trimming, chimera removal,...
This file contains .Fasta files for four mitochondrial genome sequences that had Eudyptes warhami an...
This phylum table was built in QIIME from raref_nG6XN_nchl_filtered_sorted_host_L7.txt. Chloroplast ...
Trimmed alignments for 255 genes and 38 taxa as used for the phylogenomic analysis (see Figure 2A an...
The folder contains the fasta files used to generate the ML phylogenies, the tree files generated, t...
Count table for ASVs generated from DADA2 from raw MiSeq reads. Rows are individual samples and colu...
There are three sub-directories: PhyloBayes_input, PhyloBayes_output and FastDate_analysis. The whol...
<p>The phyloseq class is an experiment-level data storage class defined by the phyloseq package for ...
Two fasta files containing all arthropod DNA sequences (seqs.fna) and the representative DNA sequenc...