Additional file 1: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Additional file 1: Table S1. of Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

Aruna Kilaru (438417)
Xia Cao (18213)
Parker Dabbs (3585512)
Ha-Jung Sung (3585503)
Md. Rahman (3413858)
Nicholas Thrower (3585506)
Greg Zynda (3585509)
Ram Podicheti (2142478)
Enrique Ibarra-Laclette (123694)
Luis Herrera-Estrella (123696)
Keithanne Mockaitis (57727)
John Ohlrogge (118853)

August 2015

Summary of RNA-seq data with details of datasets available on the NCBI Short Read Archive. Table S2....

Additional file 1: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S1. Summary of sequencing and de novo assembly of P. frutescens seed transcriptome. (XLS 21Â k...

Additional file 1: Table S1: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

Hai-Ming Xu (228762)
Xiang-Dong Kong (3535055)
Fei Chen (13690)
Ji-Xiang Huang (3535049)
Xiang-Yang Lou (228769)
Jian-Yi Zhao (3535052)

October 2015

The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...

Additional file 7: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Functional annotations of unigenes in N. caudatum developing seeds. (XLSX 15909 kb

Additional file 3: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Summery of N. caudatum unigene functional annotations in different databases. The unigenes were blas...

Additional file 2: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Length distribution of unigenes in N. caudatum and homology search against NR database. (A) Length d...

Additional file 9: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

KEGG annotation of DEGs in the developing seeds of N. caudatum. KEGG annotations of DEGs among three...

Additional file 4: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Functional classification of Gene ontology (GO) annotation of N. caudatum unigenes. Unigenes were as...

Additional file 6: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

KEGG annotations of N. caudatum unigenes. KEGG annotation was performed with a web-based tool KASS (...

Additional file 5: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Evolutionary genealogy of genes: Non-supervised Orthologous Groups (eggNOG) classification of N. cau...

Additional file 10: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Identification of unigene that involved in lipid metabolisms by Local Blast. Based on the local-blas...

Additional file 14: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

The codon-optimized sequence of NcFATB. The full-length CDS of NcFATB was codon optimized and chemic...

Additional file 8: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

GO classification of DEGs in the developing seeds of N. caudatum. GO analysis of DEGs was performed ...

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan
Yu Song
Yadong Chen
Hongbo Liu
Dongdong Yang
Qianyu Xu
Zhifu Zheng

November 2018

Abstract Background Neocinnamomum caudatum (Nees) Merr., a biodiesel tree species in the subtropical...

Additional file 3: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Åsa Grimberg (3549167)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Photo of thin-layer chromatography plate. Lipid classes of total lipid extracts corresponding to 10 ...

Additional file 1: Table S1. of Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

Aruna Kilaru (438417)
Xia Cao (18213)
Parker Dabbs (3585512)
Ha-Jung Sung (3585503)
Md. Rahman (3413858)
Nicholas Thrower (3585506)
Greg Zynda (3585509)
Ram Podicheti (2142478)
Enrique Ibarra-Laclette (123694)
Luis Herrera-Estrella (123696)
Keithanne Mockaitis (57727)
John Ohlrogge (118853)

August 2015

Summary of RNA-seq data with details of datasets available on the NCBI Short Read Archive. Table S2....

Additional file 1: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S1. Summary of sequencing and de novo assembly of P. frutescens seed transcriptome. (XLS 21Â k...

Additional file 1: Table S1: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

Hai-Ming Xu (228762)
Xiang-Dong Kong (3535055)
Fei Chen (13690)
Ji-Xiang Huang (3535049)
Xiang-Yang Lou (228769)
Jian-Yi Zhao (3535052)

October 2015

The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...

Additional file 7: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Functional annotations of unigenes in N. caudatum developing seeds. (XLSX 15909 kb

Additional file 3: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Summery of N. caudatum unigene functional annotations in different databases. The unigenes were blas...

Additional file 2: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Length distribution of unigenes in N. caudatum and homology search against NR database. (A) Length d...

Additional file 9: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

KEGG annotation of DEGs in the developing seeds of N. caudatum. KEGG annotations of DEGs among three...

Additional file 4: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Functional classification of Gene ontology (GO) annotation of N. caudatum unigenes. Unigenes were as...

Additional file 6: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

KEGG annotations of N. caudatum unigenes. KEGG annotation was performed with a web-based tool KASS (...

Additional file 5: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Evolutionary genealogy of genes: Non-supervised Orthologous Groups (eggNOG) classification of N. cau...

Additional file 10: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

Identification of unigene that involved in lipid metabolisms by Local Blast. Based on the local-blas...

Additional file 14: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

The codon-optimized sequence of NcFATB. The full-length CDS of NcFATB was codon optimized and chemic...

Additional file 8: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan (594369)
Yu Song (316955)
Yadong Chen (621664)
Hongbo Liu (124714)
Dongdong Yang (3164139)
Qianyu Xu (6011216)
Zhifu Zheng (4974794)

November 2018

GO classification of DEGs in the developing seeds of N. caudatum. GO analysis of DEGs was performed ...

Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Yi Gan
Yu Song
Yadong Chen
Hongbo Liu
Dongdong Yang
Qianyu Xu
Zhifu Zheng

November 2018

Abstract Background Neocinnamomum caudatum (Nees) Merr., a biodiesel tree species in the subtropical...

Additional file 3: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Åsa Grimberg (3549167)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Photo of thin-layer chromatography plate. Lipid classes of total lipid extracts corresponding to 10 ...

Additional file 1: Table S1. of Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

Aruna Kilaru (438417)
Xia Cao (18213)
Parker Dabbs (3585512)
Ha-Jung Sung (3585503)
Md. Rahman (3413858)
Nicholas Thrower (3585506)
Greg Zynda (3585509)
Ram Podicheti (2142478)
Enrique Ibarra-Laclette (123694)
Luis Herrera-Estrella (123696)
Keithanne Mockaitis (57727)
John Ohlrogge (118853)

August 2015

Summary of RNA-seq data with details of datasets available on the NCBI Short Read Archive. Table S2....

Additional file 1: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S1. Summary of sequencing and de novo assembly of P. frutescens seed transcriptome. (XLS 21Â k...

Additional file 1: Table S1: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

Hai-Ming Xu (228762)
Xiang-Dong Kong (3535055)
Fei Chen (13690)
Ji-Xiang Huang (3535049)
Xiang-Yang Lou (228769)
Jian-Yi Zhao (3535052)

October 2015

The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...

Additional file 1: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Abstract

Extracted data

Additional file 1: of Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr

Abstract

Extracted data

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