Additional file 4: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 1: of Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI

Rebecca Vongsa (198191)
Doug Hoffman (2437840)
Kristin Shepard (6241808)
David Koenig (198196)

January 2019

Figure S1. Unweighted UniFrac principal coordinate analysis was done to show separation between micr...

Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Table S1. Descriptive statistics of Shannon diversity and richness. Table S2. The p-values for any t...

Additional file 1: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

Community States are Consistent between Datasets. Heatmap displaying mCST and sequencing data from b...

Additional file 3: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

GBS CFU is only recovered in mCST VI mice on Day 21. Displays GBS CFU in tissues by mCST for days 14...

Additional file 1: of Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

Donald Nyangahu (5490281)
Katie Lennard (5490287)
Bryan Brown (174875)
Matthew Darby (669482)
Jerome Wendoh (5490284)
Enock Havyarimana (5490290)
Peter Smith (239008)
James Butcher (478954)
Alain Stintzi (478955)
Nicola Mulder (2995)
William Horsnell (584313)
Heather Jaspan (632934)

July 2018

Figure S1. (A) Shannon α-diversity of maternal fecal microbiota. (B) of maternal fecal microbial β-d...

Additional file 8: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S7. Correlation network of vaginal microbiota in the Aâ+âN* group. (PDF 202âkb

Additional file 1: of Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice

Kanakaraju Kaliannan (5280266)
Ruairi Robertson (5280272)
Kiera Murphy (214473)
Catherine Stanton (223943)
Chao Kang (487155)
Bin Wang (30851)
Lei Hao (5961590)
Atul Bhan (5961593)
Jing Kang (251503)

November 2018

Figure S1. Sexual dimorphism in the MS and ME and LGCI. Figure S2. Hierarchical clustering and predi...

Additional file 3 of Skin microbiota dynamics following B. subtilis formulation challenge: an in vivo study in mice

Veronica Moskovicz (11310594)
Rina Ben-El (11310597)
Guy Horev (7889825)
Boaz Mizrahi (11310600)

August 2021

Additional file 3: Supplementary Table 2. Relative abundance of the seven most represented bacterial...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 5: Figure S3. of MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses

Vanni Bucci (169724)
Belinda Tzen (3567806)
Ning Li (45258)
Matt Simmons (3567797)
Takeshi Tanoue (3567800)
Elijah Bogart (3567809)
Luxue Deng (3567815)
Vladimir Yeliseyev (596779)
Mary Delaney (596776)
Qing Liu (20889)
Bernat Olle (3567794)
Richard Stein (3567812)
Kenya Honda (261904)
Lynn Bry (145111)
Georg Gerber (3567803)

June 2016

Experimental design for probiotic stability studies in gnotobiotic mice. Seven adult germ-free mice ...

Additional file 4: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S3. Boxplot of richness and Shannon diversity index in the two subgroups of the A − N− group....

Additional file 1: of Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota

Charlotte Veer (6529292)
Rosanne Hertzberger (6529295)
Sylvia Bruisten (438918)
Hanne Tytgat (6529298)
Jorne Swanenburg (6529301)
Alie Kat Angelino-Bart (6529304)
Frank Schuren (126104)
Douwe Molenaar (37991)
Gregor Reid (163342)
Henry Vries (6529307)
Remco Kort (2446096)

March 2019

Biofilm formation, auto-aggregation, carbohydrate degradation, organic acid production, and antimicr...

Additional file 2: of Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota

Charlotte Veer (6529292)
Rosanne Hertzberger (6529295)
Sylvia Bruisten (438918)
Hanne Tytgat (6529298)
Jorne Swanenburg (6529301)
Alie Kat Angelino-Bart (6529304)
Frank Schuren (126104)
Douwe Molenaar (37991)
Gregor Reid (163342)
Henry Vries (6529307)
Remco Kort (2446096)

March 2019

Transcripts of Lactobacillus crispatus glycosyltransferase gene fragments in vaginal samples of wome...

The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac
Angelica M. Riestra
Alison Coady
Rob Knight
Victor Nizet
Kathryn A. Patras

November 2018

Abstract Background Composition of the vaginal microbiota has significant influence on female urogen...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 1: of Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI

Rebecca Vongsa (198191)
Doug Hoffman (2437840)
Kristin Shepard (6241808)
David Koenig (198196)

January 2019

Figure S1. Unweighted UniFrac principal coordinate analysis was done to show separation between micr...

Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Table S1. Descriptive statistics of Shannon diversity and richness. Table S2. The p-values for any t...

Additional file 1: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

Community States are Consistent between Datasets. Heatmap displaying mCST and sequencing data from b...

Additional file 3: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

GBS CFU is only recovered in mCST VI mice on Day 21. Displays GBS CFU in tissues by mCST for days 14...

Additional file 1: of Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

Donald Nyangahu (5490281)
Katie Lennard (5490287)
Bryan Brown (174875)
Matthew Darby (669482)
Jerome Wendoh (5490284)
Enock Havyarimana (5490290)
Peter Smith (239008)
James Butcher (478954)
Alain Stintzi (478955)
Nicola Mulder (2995)
William Horsnell (584313)
Heather Jaspan (632934)

July 2018

Figure S1. (A) Shannon α-diversity of maternal fecal microbiota. (B) of maternal fecal microbial β-d...

Additional file 8: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S7. Correlation network of vaginal microbiota in the Aâ+âN* group. (PDF 202âkb

Additional file 1: of Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice

Kanakaraju Kaliannan (5280266)
Ruairi Robertson (5280272)
Kiera Murphy (214473)
Catherine Stanton (223943)
Chao Kang (487155)
Bin Wang (30851)
Lei Hao (5961590)
Atul Bhan (5961593)
Jing Kang (251503)

November 2018

Figure S1. Sexual dimorphism in the MS and ME and LGCI. Figure S2. Hierarchical clustering and predi...

Additional file 3 of Skin microbiota dynamics following B. subtilis formulation challenge: an in vivo study in mice

Veronica Moskovicz (11310594)
Rina Ben-El (11310597)
Guy Horev (7889825)
Boaz Mizrahi (11310600)

August 2021

Additional file 3: Supplementary Table 2. Relative abundance of the seven most represented bacterial...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 5: Figure S3. of MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses

Vanni Bucci (169724)
Belinda Tzen (3567806)
Ning Li (45258)
Matt Simmons (3567797)
Takeshi Tanoue (3567800)
Elijah Bogart (3567809)
Luxue Deng (3567815)
Vladimir Yeliseyev (596779)
Mary Delaney (596776)
Qing Liu (20889)
Bernat Olle (3567794)
Richard Stein (3567812)
Kenya Honda (261904)
Lynn Bry (145111)
Georg Gerber (3567803)

June 2016

Experimental design for probiotic stability studies in gnotobiotic mice. Seven adult germ-free mice ...

Additional file 4: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S3. Boxplot of richness and Shannon diversity index in the two subgroups of the A − N− group....

Additional file 1: of Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota

Charlotte Veer (6529292)
Rosanne Hertzberger (6529295)
Sylvia Bruisten (438918)
Hanne Tytgat (6529298)
Jorne Swanenburg (6529301)
Alie Kat Angelino-Bart (6529304)
Frank Schuren (126104)
Douwe Molenaar (37991)
Gregor Reid (163342)
Henry Vries (6529307)
Remco Kort (2446096)

March 2019

Biofilm formation, auto-aggregation, carbohydrate degradation, organic acid production, and antimicr...

Additional file 2: of Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota

Charlotte Veer (6529292)
Rosanne Hertzberger (6529295)
Sylvia Bruisten (438918)
Hanne Tytgat (6529298)
Jorne Swanenburg (6529301)
Alie Kat Angelino-Bart (6529304)
Frank Schuren (126104)
Douwe Molenaar (37991)
Gregor Reid (163342)
Henry Vries (6529307)
Remco Kort (2446096)

March 2019

Transcripts of Lactobacillus crispatus glycosyltransferase gene fragments in vaginal samples of wome...

The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac
Angelica M. Riestra
Alison Coady
Rob Knight
Victor Nizet
Kathryn A. Patras

November 2018

Abstract Background Composition of the vaginal microbiota has significant influence on female urogen...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 1: of Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI

Rebecca Vongsa (198191)
Doug Hoffman (2437840)
Kristin Shepard (6241808)
David Koenig (198196)

January 2019

Figure S1. Unweighted UniFrac principal coordinate analysis was done to show separation between micr...

Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Table S1. Descriptive statistics of Shannon diversity and richness. Table S2. The p-values for any t...

Additional file 4: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Abstract

Extracted data

Additional file 4: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Abstract

Extracted data

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