Figure S1. Rarefaction curves of detected genes from the whole set of 495 samples (Total) and from subgroups of each intestinal compartment (99 samples). D (duodenum), J (jejunum), I (ileum), C (cecum), R (colorectum). The gene number of a specific number of samples was calculated after random samplings repeated 100 times with replacement, and the median was plotted. (PDF 211 kb
Figure S10. Microbial gene functional differences between foregut and hindgut though eggNOG annotati...
Figure S5. Microbial community compositions of the duodenum, jejunum, ileum, cecum, and colorectum a...
Table S8. The relative mRNA levels of cytokines in the ileum of Arbor Acres broiler chickens on days...
Table S4. The number of shared genes of samples in each intestinal compartment of chickens. (XLSX 53...
Figure S14. The relative abundance of major genera in the foregut and hindgut at different ages. Th...
Table S2. Comparison of gut microbial gene catalogs of human, pig and chicken. (XLSX 38 kb
Table S5. The relative abundances of major phyla at different ages (average relative abundance >â0...
Figure S9. Comparison of KEGG functional profiles of five intestinal compartments. The average relat...
Table S6. The relative abundances of major genera at different ages (average relative abundance >â...
Figure S2. Functional annotation of gut microbial genes based on KEGG orthologous groups (KOs) and e...
Figure S20. The relative abundances of core genera significantly changed by CTC or MCE in the foregu...
Figure S17. The influences of CTC and MCE on microbial diversity (Shannon index) at gene, genus, OG ...
Figure S6. The NMDS plot of foregut samples in five Distribution groups (DGY, DHC, DHK, DSL, DST) ba...
Figure S8. Average relative abundance of phylum Actinobacteria of foregut samples in five Distributi...
Figure S11. Comparison of eggNOG functional profiles of five intestinal compartments. The average re...
Figure S10. Microbial gene functional differences between foregut and hindgut though eggNOG annotati...
Figure S5. Microbial community compositions of the duodenum, jejunum, ileum, cecum, and colorectum a...
Table S8. The relative mRNA levels of cytokines in the ileum of Arbor Acres broiler chickens on days...
Table S4. The number of shared genes of samples in each intestinal compartment of chickens. (XLSX 53...
Figure S14. The relative abundance of major genera in the foregut and hindgut at different ages. Th...
Table S2. Comparison of gut microbial gene catalogs of human, pig and chicken. (XLSX 38 kb
Table S5. The relative abundances of major phyla at different ages (average relative abundance >â0...
Figure S9. Comparison of KEGG functional profiles of five intestinal compartments. The average relat...
Table S6. The relative abundances of major genera at different ages (average relative abundance >â...
Figure S2. Functional annotation of gut microbial genes based on KEGG orthologous groups (KOs) and e...
Figure S20. The relative abundances of core genera significantly changed by CTC or MCE in the foregu...
Figure S17. The influences of CTC and MCE on microbial diversity (Shannon index) at gene, genus, OG ...
Figure S6. The NMDS plot of foregut samples in five Distribution groups (DGY, DHC, DHK, DSL, DST) ba...
Figure S8. Average relative abundance of phylum Actinobacteria of foregut samples in five Distributi...
Figure S11. Comparison of eggNOG functional profiles of five intestinal compartments. The average re...
Figure S10. Microbial gene functional differences between foregut and hindgut though eggNOG annotati...
Figure S5. Microbial community compositions of the duodenum, jejunum, ileum, cecum, and colorectum a...
Table S8. The relative mRNA levels of cytokines in the ileum of Arbor Acres broiler chickens on days...