Additional file 2: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Additional file 4: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing 62 genes, annotated by COG, that are only present in Klebsiella pneumoniae subsp. ozae...

Additional file 3: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing the 202 genes, annotated by COG, present in the 6 strains of Klebsiella pneumoniae exc...

Additional file 1: of Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes

Ting Peng (276655)
Yinzhen Xu (5771660)
Yan Zhang (8098)

September 2018

Table S1. Occurrence of theÂ Mo utilization trait in bacteria. Table S2. Occurrence of theÂ Mo utili...

Additional file 1: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S1. List of genomes of K. oxytoca strains used for comparative genomics. (XLSX 10 kb

Additional file 6: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S4. List of genes associate with cps1 cluster in DSM 29614 strain. (XLSX 10 kb

Additional file 3: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S3. List of metal resistance genes identified in the DSM 29614 strain genome. (XLSX 48 kb

Additional file 4: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Figure S1. K. oxytoca DSM 29614 grown in NaC (left) and in FeC medium (right) after 7 day of incubat...

Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Gallo, Giuseppe
Presta, Luana
Perrin, Elena
Gallo, Michele
Marchetto, Davide
Puglia, Anna Maria
Fani, Renato
Baldi, Franco

January 2018

BACKGROUND: Klebsiella oxytoca DSM 29614 - isolated from acid mine drainages - grows anaerobically u...

Additional file 2: of Genome mining for natural product biosynthetic gene clusters in the Subsection V cyanobacteria

Melinda Micallef (3573422)
Paul DâAgostino (3573425)
Deepti Sharma (802056)
Rajesh Viswanathan (1455286)
Michelle Moffitt (3573419)

September 2015

W. intricata UH strain HT-29-1 and H. welwitschii UH strain IC-52-3 102 housekeeping genes, COGs. (X...

Additional file 1: of High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T

Xian Xia (398501)
Jiahong Li (1608247)
Zijie Zhou (4890928)
Dan Wang (34472)
Jing Huang (41604)
Gejiao Wang (115157)

October 2018

Table S1. Putative heavy metal(loid)s resistance proteins. Table S2. Putative nucleotide sugars bios...

Additional file 1: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Hierarchical clustering of the Klebsiella pneumoniae strains based on the number of aminoacil transf...

Additional file 2: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Figure S1. Whole-cell absorption spectra of Synechocystis sp. PCC6803 wild-type strain, ethanol-prod...

Additional file 2: Table S2. of Genome sequencing and analysis of the first spontaneous Nanosilver resistant bacterium Proteus mirabilis strain SCDR1

Amr Saeb (4614241)
Khalid Al-Rubeaan (526186)
Mohamed Abouelhoda (3463481)
Manojkumar Selvaraju (4614238)
Hamsa Tayeb (4614244)

November 2017

Distribution of unique gene counts amongst pathways Classes and subclasses. (DOCX 16 kb

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 2: of Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Laura Becker (3559670)
Martin Kaase (4876885)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Annicka Reuss (5168066)
Anja von Laer (5168072)
Muna Sin (5168069)
Miriam Korte-Berwanger (5168063)
SĂśren Gatermann (5168075)
Guido Werner (28655)

May 2018

Table S1. Metadata of the 107 German carbapenemase-producing, clinical Klebsiella isolates, 2008-201...

Additional file 4: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing 62 genes, annotated by COG, that are only present in Klebsiella pneumoniae subsp. ozae...

Additional file 3: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing the 202 genes, annotated by COG, present in the 6 strains of Klebsiella pneumoniae exc...

Additional file 1: of Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes

Ting Peng (276655)
Yinzhen Xu (5771660)
Yan Zhang (8098)

September 2018

Table S1. Occurrence of theÂ Mo utilization trait in bacteria. Table S2. Occurrence of theÂ Mo utili...

Additional file 1: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S1. List of genomes of K. oxytoca strains used for comparative genomics. (XLSX 10 kb

Additional file 6: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S4. List of genes associate with cps1 cluster in DSM 29614 strain. (XLSX 10 kb

Additional file 3: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Table S3. List of metal resistance genes identified in the DSM 29614 strain genome. (XLSX 48 kb

Additional file 4: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Giuseppe Gallo (774812)
Luana Presta (3498908)
Elena Perrin (224218)
Michele Gallo (2039071)
Davide Marchetto (845569)
Anna Puglia (3444401)
Renato Fani (66034)
Franco Baldi (845573)

November 2018

Figure S1. K. oxytoca DSM 29614 grown in NaC (left) and in FeC medium (right) after 7 day of incubat...

Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Gallo, Giuseppe
Presta, Luana
Perrin, Elena
Gallo, Michele
Marchetto, Davide
Puglia, Anna Maria
Fani, Renato
Baldi, Franco

January 2018

BACKGROUND: Klebsiella oxytoca DSM 29614 - isolated from acid mine drainages - grows anaerobically u...

Additional file 2: of Genome mining for natural product biosynthetic gene clusters in the Subsection V cyanobacteria

Melinda Micallef (3573422)
Paul DâAgostino (3573425)
Deepti Sharma (802056)
Rajesh Viswanathan (1455286)
Michelle Moffitt (3573419)

September 2015

W. intricata UH strain HT-29-1 and H. welwitschii UH strain IC-52-3 102 housekeeping genes, COGs. (X...

Additional file 1: of High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T

Xian Xia (398501)
Jiahong Li (1608247)
Zijie Zhou (4890928)
Dan Wang (34472)
Jing Huang (41604)
Gejiao Wang (115157)

October 2018

Table S1. Putative heavy metal(loid)s resistance proteins. Table S2. Putative nucleotide sugars bios...

Additional file 1: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Hierarchical clustering of the Klebsiella pneumoniae strains based on the number of aminoacil transf...

Additional file 2: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Figure S1. Whole-cell absorption spectra of Synechocystis sp. PCC6803 wild-type strain, ethanol-prod...

Additional file 2: Table S2. of Genome sequencing and analysis of the first spontaneous Nanosilver resistant bacterium Proteus mirabilis strain SCDR1

Amr Saeb (4614241)
Khalid Al-Rubeaan (526186)
Mohamed Abouelhoda (3463481)
Manojkumar Selvaraju (4614238)
Hamsa Tayeb (4614244)

November 2017

Distribution of unique gene counts amongst pathways Classes and subclasses. (DOCX 16 kb

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 2: of Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Laura Becker (3559670)
Martin Kaase (4876885)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Annicka Reuss (5168066)
Anja von Laer (5168072)
Muna Sin (5168069)
Miriam Korte-Berwanger (5168063)
SĂśren Gatermann (5168075)
Guido Werner (28655)

May 2018

Table S1. Metadata of the 107 German carbapenemase-producing, clinical Klebsiella isolates, 2008-201...

Additional file 4: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing 62 genes, annotated by COG, that are only present in Klebsiella pneumoniae subsp. ozae...

Additional file 3: of Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

AurĂŠlia Caputo (3566957)
Vicky Merhej (171693)
Kalliopi Georgiades (199075)
Pierre-Edouard Fournier (13453)
Olivier Croce (585362)
Catherine Robert (13458)
Didier Raoult (3833)

September 2015

Table showing the 202 genes, annotated by COG, present in the 6 strains of Klebsiella pneumoniae exc...

Additional file 1: of Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes

Ting Peng (276655)
Yinzhen Xu (5771660)
Yan Zhang (8098)

September 2018

Table S1. Occurrence of theÂ Mo utilization trait in bacteria. Table S2. Occurrence of theÂ Mo utili...

Additional file 2: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Abstract

Extracted data

Additional file 2: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

Abstract

Extracted data

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