Additional file 2: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Additional file 2: Figure S1. of Comparative analysis of gene expression profiles in normal hip human cartilage and cartilage from patients with necrosis of the femoral head

Ruiyu Liu (3202212)
Qi Liu (33068)
Kunzheng Wang (311238)
Xiaoqian Dang (318409)
Feng Zhang (6548)

May 2016

Hematoxylin and eosin (HE), safranin O (SO) and toluidine blue (TU) staining of NFH articular cartil...

Proteomic comparison of osteoarthritic and reference human menisci using data-independent acquisition mass spectrometry

Folkesson, E.
Turkiewicz, A.
Ali, N.
Rydén, M.
Hughes, H. V.
Tjörnstrand, J.
Önnerfjord, P.
Englund, M.

August 2020

Objective: Recent research in knee osteoarthritis (OA) highlights the role of the meniscus in OA pat...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 3: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson (2549188)
Aleksandra Turkiewicz (3712609)
Martin Englund (325535)
Patrik Ănnerfjord (6031772)

November 2018

Agreement analysis of DDA and DIA results. The estimates are ratios (DIA vs DDA) of intensity ratios...

Additional file 1: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson (2549188)
Aleksandra Turkiewicz (3712609)
Martin Englund (325535)
Patrik Önnerfjord (373422)

November 2018

Sample preparation workflow. Schematic representation of the sample preparation steps from tissue co...

Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods : A pilot analysis

Folkesson, Elin
Turkiewicz, Aleksandra
Englund, Martin
Önnerfjord, Patrik

November 2018

Background: Proteomics is an emerging field in the study of joint disease. Our two aims with this pi...

Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson
Aleksandra Turkiewicz
Martin Englund
Patrik Önnerfjord

November 2018

Abstract Background Proteomics is an emerging field in the study of joint disease. Our two aims with...

Proteomic Analysis of the Meniscus Cartilage in Osteoarthritis

Jisook Park
Hyun-Seung Lee
Eun-Bi Go
Ju Yeon Lee
Jin Young Kim
Soo-Youn Lee
Dae-Hee Lee

July 2021

The distribution of differential extracellular matrix (ECM) in the lateral and medial menisci can co...

Additional file 1: of Two independent proteomic approaches provide a comprehensive analysis of the synovial fluid proteome response to Autologous Chondrocyte Implantation

Charlotte Hulme (5167961)
Emma Wilson (663973)
Heidi Fuller (5167955)
Sally Roberts (1688)
James Richardson (2237074)
Pete Gallacher (5167958)
Mandy Peffers (3501863)
Sally Shirran (5167964)
Catherine Botting (3533342)
Karina Wright (376927)

May 2018

Table S1. Canonical pathways altered in the synovial fluid of clinical nonresponders at stage I comp...

Additional file 2: of Expression of minor cartilage collagens and small leucine rich proteoglycans may be relatively reduced in osteoarthritic cartilage

Nobuho Tanaka (6712577)
Toshiyuki Tashiro (35927)
Yozo Katsuragawa (6712580)
Motoji Sawabe (174048)
Hiroshi Furukawa (290179)
Naoshi Fukui (86346)

May 2019

Figure S1. For the cDNA microarray analysis, cartilage tissues were obtained from 10 OA knees and 9 ...

Additional file 2: of New insights into the protein aggregation pathology in myotilinopathy by combined proteomic and immunolocalization analyses

A. Maerkens (3530789)
M. OlivĂŠ (3530813)
A. Schreiner (3530801)
S. Feldkirchner (3530804)
J. Schessl (3530759)
J. Uszkoreit (3530771)
K. Barkovits (3530777)
A. GĂźttsches (3530807)
V. Theis (3530765)
M. Eisenacher (3530753)
M. Tegenthoff (3530768)
L. Goldfarb (3530750)
R. SchrĂśder (3530816)
B. Schoser (3530795)
P. van der Ven (3530774)
D. FĂźrst (3530810)
M. Vorgerd (3530798)
K. Marcus (3530762)
R. Kley (3530780)

February 2016

Table S2.Â Accession number (Swiss-Prot) and names of genes coding for proteins identified as over-r...

Quantitative Proteomic Analysis of Eight Cartilaginous Tissues Reveals Characteristic Differences as well as Similarities between Subgroups.

Önnerfjord, Patrik
Khabut, Areej
Reinholt, Finn P
Svensson, Olle
Heinegård, Dick

January 2012

Human synovial joints display a characteristic anatomic distribution of arthritis e.g. rheumatoid ar...

Identification of tissue-dependent proteins in knee OA synovial fluid

Timur, U.T.
Jahr, H.
Anderson, J.
Green, D.C.
Emans, P.J.
Smagul, A.
van Rhijn, L.W.
Peffers, M.J.
Welting, T.J.M.

January 2021

Objective: For many proteins from osteoarthritic synovial fluid, their intra-articular tissue of ori...

Proteomic characterization of the normal human medial meniscus body using data-independent acquisition mass spectrometry

Folkesson, Elin
Turkiewicz, Aleksandra
Rydén, Martin
Hughes, Harini Velocity
Ali, Neserin
Tjörnstrand, Jon
Önnerfjord, Patrik
Englund, Martin

August 2020

Recent research suggests an important role of the meniscus in the development of knee osteoarthritis...

Additional file 1: of A proteomic analysis of serum-derived exosomes in rheumatoid arthritis

Hirotaka Tsuno (4228282)
Mitsumi Arito (6011528)
Naoya Suematsu (6011531)
Toshiyuki Sato (1867738)
Atsushi Hashimoto (290186)
Toshihiro Matsui (1917)
Kazuki Omoteyama (6011534)
Masaaki Sato (735435)
Kazuki Okamoto (6011537)
Shigeto Tohma (290204)
Manae Kurokawa (6011540)
Tomohiro Kato (1919)

November 2018

Figure S1. Location of differently enriched protein spots. Table S1. Averages of spot intensities of...

Additional file 2: Figure S1. of Comparative analysis of gene expression profiles in normal hip human cartilage and cartilage from patients with necrosis of the femoral head

Ruiyu Liu (3202212)
Qi Liu (33068)
Kunzheng Wang (311238)
Xiaoqian Dang (318409)
Feng Zhang (6548)

May 2016

Hematoxylin and eosin (HE), safranin O (SO) and toluidine blue (TU) staining of NFH articular cartil...

Proteomic comparison of osteoarthritic and reference human menisci using data-independent acquisition mass spectrometry

Folkesson, E.
Turkiewicz, A.
Ali, N.
Rydén, M.
Hughes, H. V.
Tjörnstrand, J.
Önnerfjord, P.
Englund, M.

August 2020

Objective: Recent research in knee osteoarthritis (OA) highlights the role of the meniscus in OA pat...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 3: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson (2549188)
Aleksandra Turkiewicz (3712609)
Martin Englund (325535)
Patrik Ănnerfjord (6031772)

November 2018

Agreement analysis of DDA and DIA results. The estimates are ratios (DIA vs DDA) of intensity ratios...

Additional file 1: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson (2549188)
Aleksandra Turkiewicz (3712609)
Martin Englund (325535)
Patrik Önnerfjord (373422)

November 2018

Sample preparation workflow. Schematic representation of the sample preparation steps from tissue co...

Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods : A pilot analysis

Folkesson, Elin
Turkiewicz, Aleksandra
Englund, Martin
Önnerfjord, Patrik

November 2018

Background: Proteomics is an emerging field in the study of joint disease. Our two aims with this pi...

Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Elin Folkesson
Aleksandra Turkiewicz
Martin Englund
Patrik Önnerfjord

November 2018

Abstract Background Proteomics is an emerging field in the study of joint disease. Our two aims with...

Proteomic Analysis of the Meniscus Cartilage in Osteoarthritis

Jisook Park
Hyun-Seung Lee
Eun-Bi Go
Ju Yeon Lee
Jin Young Kim
Soo-Youn Lee
Dae-Hee Lee

July 2021

The distribution of differential extracellular matrix (ECM) in the lateral and medial menisci can co...

Additional file 1: of Two independent proteomic approaches provide a comprehensive analysis of the synovial fluid proteome response to Autologous Chondrocyte Implantation

Charlotte Hulme (5167961)
Emma Wilson (663973)
Heidi Fuller (5167955)
Sally Roberts (1688)
James Richardson (2237074)
Pete Gallacher (5167958)
Mandy Peffers (3501863)
Sally Shirran (5167964)
Catherine Botting (3533342)
Karina Wright (376927)

May 2018

Table S1. Canonical pathways altered in the synovial fluid of clinical nonresponders at stage I comp...

Additional file 2: of Expression of minor cartilage collagens and small leucine rich proteoglycans may be relatively reduced in osteoarthritic cartilage

Nobuho Tanaka (6712577)
Toshiyuki Tashiro (35927)
Yozo Katsuragawa (6712580)
Motoji Sawabe (174048)
Hiroshi Furukawa (290179)
Naoshi Fukui (86346)

May 2019

Figure S1. For the cDNA microarray analysis, cartilage tissues were obtained from 10 OA knees and 9 ...

Additional file 2: of New insights into the protein aggregation pathology in myotilinopathy by combined proteomic and immunolocalization analyses

A. Maerkens (3530789)
M. OlivĂŠ (3530813)
A. Schreiner (3530801)
S. Feldkirchner (3530804)
J. Schessl (3530759)
J. Uszkoreit (3530771)
K. Barkovits (3530777)
A. GĂźttsches (3530807)
V. Theis (3530765)
M. Eisenacher (3530753)
M. Tegenthoff (3530768)
L. Goldfarb (3530750)
R. SchrĂśder (3530816)
B. Schoser (3530795)
P. van der Ven (3530774)
D. FĂźrst (3530810)
M. Vorgerd (3530798)
K. Marcus (3530762)
R. Kley (3530780)

February 2016

Table S2.Â Accession number (Swiss-Prot) and names of genes coding for proteins identified as over-r...

Quantitative Proteomic Analysis of Eight Cartilaginous Tissues Reveals Characteristic Differences as well as Similarities between Subgroups.

Önnerfjord, Patrik
Khabut, Areej
Reinholt, Finn P
Svensson, Olle
Heinegård, Dick

January 2012

Human synovial joints display a characteristic anatomic distribution of arthritis e.g. rheumatoid ar...

Identification of tissue-dependent proteins in knee OA synovial fluid

Timur, U.T.
Jahr, H.
Anderson, J.
Green, D.C.
Emans, P.J.
Smagul, A.
van Rhijn, L.W.
Peffers, M.J.
Welting, T.J.M.

January 2021

Objective: For many proteins from osteoarthritic synovial fluid, their intra-articular tissue of ori...

Proteomic characterization of the normal human medial meniscus body using data-independent acquisition mass spectrometry

Folkesson, Elin
Turkiewicz, Aleksandra
Rydén, Martin
Hughes, Harini Velocity
Ali, Neserin
Tjörnstrand, Jon
Önnerfjord, Patrik
Englund, Martin

August 2020

Recent research suggests an important role of the meniscus in the development of knee osteoarthritis...

Additional file 1: of A proteomic analysis of serum-derived exosomes in rheumatoid arthritis

Hirotaka Tsuno (4228282)
Mitsumi Arito (6011528)
Naoya Suematsu (6011531)
Toshiyuki Sato (1867738)
Atsushi Hashimoto (290186)
Toshihiro Matsui (1917)
Kazuki Omoteyama (6011534)
Masaaki Sato (735435)
Kazuki Okamoto (6011537)
Shigeto Tohma (290204)
Manae Kurokawa (6011540)
Tomohiro Kato (1919)

November 2018

Figure S1. Location of differently enriched protein spots. Table S1. Averages of spot intensities of...

Additional file 2: Figure S1. of Comparative analysis of gene expression profiles in normal hip human cartilage and cartilage from patients with necrosis of the femoral head

Ruiyu Liu (3202212)
Qi Liu (33068)
Kunzheng Wang (311238)
Xiaoqian Dang (318409)
Feng Zhang (6548)

May 2016

Hematoxylin and eosin (HE), safranin O (SO) and toluidine blue (TU) staining of NFH articular cartil...

Proteomic comparison of osteoarthritic and reference human menisci using data-independent acquisition mass spectrometry

Folkesson, E.
Turkiewicz, A.
Ali, N.
Rydén, M.
Hughes, H. V.
Tjörnstrand, J.
Önnerfjord, P.
Englund, M.

August 2020

Objective: Recent research in knee osteoarthritis (OA) highlights the role of the meniscus in OA pat...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 2: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Abstract

Extracted data

Additional file 2: of Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis

Abstract

Extracted data

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