Log2 of the LFQ intensities of all proteins, which were quantified in 100% of the samples, are shown in A (red box plots). The data were not further normalized or transformed once the values from MaxQuant were obtained. B shows the log2 of peptide retention times for every LC-MS/MS run (green box plots).</p
the small retention time shifts that were observed between runs (A). Reduction of variation in the r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p><b>A</b>, Time course of reaction of LcA utilizing the 17-mer peptide (0.5 mM) as a substrate in ...
<p>X-axis: retention time. Y-axis: peak intensity. A) Extracted ion chromatogram (XIC) for peptide G...
<p>The relative levels of all peptides identified by MS/MS analysis in the Q7Q111 (A) and Q111Q111 (...
(LC-MS/MS) is a powerful tool in proteomics studies, but when peptide retention information is used ...
<p>The level of peptide in each biological replicate, relative to the average control level, was det...
Motivation: In the analysis of differential peptide peak intensities (i.e. abundance measures), LC-M...
<p>The LC retention time is shown on the y-axis and the <i>m/z</i> on the x-axis. (a) Without sample...
<p><b>Copyright information:</b></p><p>Taken from "The PeptideAtlas project"</p><p>Nucleic Acids Res...
LFQ intensity-based heatmap of the top 50 proteins. Top 50 proteins were defined by their mean LFQ i...
<p>For Reference samples that were measured during both NELSON 1 and NELSON 2, we compared peptides ...
Motivation: Protein abundance in quantitative proteomics is often based on observed spectral feature...
The box plots data distribution includes minimum, first quartile, median, third quartile, and maximu...
<p>In this experiment, the two replicates of Q7Q7 cells were labeled with D0- and D3-TMAB-NHS, one r...
the small retention time shifts that were observed between runs (A). Reduction of variation in the r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p><b>A</b>, Time course of reaction of LcA utilizing the 17-mer peptide (0.5 mM) as a substrate in ...
<p>X-axis: retention time. Y-axis: peak intensity. A) Extracted ion chromatogram (XIC) for peptide G...
<p>The relative levels of all peptides identified by MS/MS analysis in the Q7Q111 (A) and Q111Q111 (...
(LC-MS/MS) is a powerful tool in proteomics studies, but when peptide retention information is used ...
<p>The level of peptide in each biological replicate, relative to the average control level, was det...
Motivation: In the analysis of differential peptide peak intensities (i.e. abundance measures), LC-M...
<p>The LC retention time is shown on the y-axis and the <i>m/z</i> on the x-axis. (a) Without sample...
<p><b>Copyright information:</b></p><p>Taken from "The PeptideAtlas project"</p><p>Nucleic Acids Res...
LFQ intensity-based heatmap of the top 50 proteins. Top 50 proteins were defined by their mean LFQ i...
<p>For Reference samples that were measured during both NELSON 1 and NELSON 2, we compared peptides ...
Motivation: Protein abundance in quantitative proteomics is often based on observed spectral feature...
The box plots data distribution includes minimum, first quartile, median, third quartile, and maximu...
<p>In this experiment, the two replicates of Q7Q7 cells were labeled with D0- and D3-TMAB-NHS, one r...
the small retention time shifts that were observed between runs (A). Reduction of variation in the r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p><b>A</b>, Time course of reaction of LcA utilizing the 17-mer peptide (0.5 mM) as a substrate in ...