Hierarchical graph related to molecular function and biological process of enrichment analysis of the clusters 2 and 4. The graph contains statistically significant terms. The nodes in the image are classified into ten levels, which are associated with corresponding specific colors. The smaller the term adjusted p-value, the more significant statistically, with nodes with darker and redder color colors. Inside the box of the significant terms, the information includes: GO term, adjusted p-value, GO description, number of items mapping the GO in the query list and background, and total number of query list and background. (TIF 7463 kb
Weighted gene co-expression network analysis of antioxidants-associated genes. Hierarchical cluster ...
Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...
KEGG pathway size distribution. Parsed KEGG databases consisted of 116 pathways, with the smallest p...
Figure of Merit. The graph represents the measure of fit of the expression patterns for the clusters...
Details about BBHs and confirmation levels for each specific cluster detected by our expression anal...
Mapping of the BBHs on the metabolic pathways. Mapping of the BBHs belonging to the cluster 2, 4, 19...
Comparison between orthology relationships predicted by EnsemblPlants / Gramene platforms and by our...
Pseudocode of the Orthologs search. The analysis implements the search for Bidirectional Best Hits c...
Pseudocode of the Paralogs search. The analysis implements the identification of paralogs of a given...
Pseudocode of the Networks definition. The analysis implements the definition of networks by the Net...
Protein descriptions of tomato âunknownâ genes. List of unknown genes in the iTAG annotation, en...
Functional analysis of the red module. Over-represented GO/pathway terms were grouped based on kappa...
Functional analysis of the red module genes. Over-represented GO/pathway terms were grouped based on...
Proportion of nodes with Shannon’s index scores greater than one for sequence feature functional cla...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Weighted gene co-expression network analysis of antioxidants-associated genes. Hierarchical cluster ...
Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...
KEGG pathway size distribution. Parsed KEGG databases consisted of 116 pathways, with the smallest p...
Figure of Merit. The graph represents the measure of fit of the expression patterns for the clusters...
Details about BBHs and confirmation levels for each specific cluster detected by our expression anal...
Mapping of the BBHs on the metabolic pathways. Mapping of the BBHs belonging to the cluster 2, 4, 19...
Comparison between orthology relationships predicted by EnsemblPlants / Gramene platforms and by our...
Pseudocode of the Orthologs search. The analysis implements the search for Bidirectional Best Hits c...
Pseudocode of the Paralogs search. The analysis implements the identification of paralogs of a given...
Pseudocode of the Networks definition. The analysis implements the definition of networks by the Net...
Protein descriptions of tomato âunknownâ genes. List of unknown genes in the iTAG annotation, en...
Functional analysis of the red module. Over-represented GO/pathway terms were grouped based on kappa...
Functional analysis of the red module genes. Over-represented GO/pathway terms were grouped based on...
Proportion of nodes with Shannon’s index scores greater than one for sequence feature functional cla...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Weighted gene co-expression network analysis of antioxidants-associated genes. Hierarchical cluster ...
Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...
KEGG pathway size distribution. Parsed KEGG databases consisted of 116 pathways, with the smallest p...