The stability free-energy parameters (ΔGR1, ΔGR2, ΔGRT1, ΔGRT2, Δgint,R, Δgint,T) vary randomly with an equal probability density between −8 and +8 kcal/mol, resulting in different systems (samples). (a) The average weights of pathways as functions of CRtot. The pathway weights of a system (sample) are calculated based on Eqs 6 and 7. (b) The capacity of three pathways for allostery, being calculated with Eq (12). The A-R binding mode is adopted in left panels and the A-T binding mode is adopted in right panels with ΔgLig,A = −3 kcal/mol. It is noted that a large portion of samples practically have CR = 0 and the pathway contributions are ill-defined with Eqs 6 and 7, which are thus ignored.</p
a<p>Relative energies, with respect to the most stable prereactive complex, of the critical structur...
A) Cumulative relative flexibility of the reactions. Solid lines represent the distribution of relat...
Equilibrium free-energy differences can be computed from nonequilibrium molecular dynamics (MD) simu...
(a) The possibilities for three pathways [calculated with Eq (12)] obtained at different [–ΔGmax, +Δ...
The A-R binding mode is adopted. (a) Proportion of four categories [single subsystem with single pat...
(a,b) CR as a function of Δgint,R and Δgint,T (in kcal/mol) when the other parameters are fixed (cho...
The arrows indicate the population shifts caused by ligand binding which are capable of affecting th...
<p>Molecularities analysed include (A) Uni-Uni, (B) Bi-Bi and (C) Ter-Ter reaction mechanisms. In ea...
(a) The relations among PRR, ΔGi and CR for the MWC model with two states, plotted according to Eqs ...
<p>Parameter analysis for the glycolysis∶pentose phosphate pathway split ratio of 95∶5. A) The distr...
<p><b>a)</b> For different pathways, two measures of intrinsic stability are presented. First, in da...
(a) Distribution of lnα where α is the thermodynamic allosteric efficacy defined in Eq (13), as well...
Each domain (blue and yellow) can be in R (Relaxed), T (Tensed) and I (Disordered) state. R and T ar...
<p>(A-B) fast (<i>k</i><sub>+</sub><i>c</i><sub>0</sub> = 20<i>s</i><sup>−1</sup>, <i>k</i><sub>−</s...
<p>Model versus experimental absolute Cα chemical shifts for (A) 100 WT ensembles and (B) 100 ΔK280 ...
a<p>Relative energies, with respect to the most stable prereactive complex, of the critical structur...
A) Cumulative relative flexibility of the reactions. Solid lines represent the distribution of relat...
Equilibrium free-energy differences can be computed from nonequilibrium molecular dynamics (MD) simu...
(a) The possibilities for three pathways [calculated with Eq (12)] obtained at different [–ΔGmax, +Δ...
The A-R binding mode is adopted. (a) Proportion of four categories [single subsystem with single pat...
(a,b) CR as a function of Δgint,R and Δgint,T (in kcal/mol) when the other parameters are fixed (cho...
The arrows indicate the population shifts caused by ligand binding which are capable of affecting th...
<p>Molecularities analysed include (A) Uni-Uni, (B) Bi-Bi and (C) Ter-Ter reaction mechanisms. In ea...
(a) The relations among PRR, ΔGi and CR for the MWC model with two states, plotted according to Eqs ...
<p>Parameter analysis for the glycolysis∶pentose phosphate pathway split ratio of 95∶5. A) The distr...
<p><b>a)</b> For different pathways, two measures of intrinsic stability are presented. First, in da...
(a) Distribution of lnα where α is the thermodynamic allosteric efficacy defined in Eq (13), as well...
Each domain (blue and yellow) can be in R (Relaxed), T (Tensed) and I (Disordered) state. R and T ar...
<p>(A-B) fast (<i>k</i><sub>+</sub><i>c</i><sub>0</sub> = 20<i>s</i><sup>−1</sup>, <i>k</i><sub>−</s...
<p>Model versus experimental absolute Cα chemical shifts for (A) 100 WT ensembles and (B) 100 ΔK280 ...
a<p>Relative energies, with respect to the most stable prereactive complex, of the critical structur...
A) Cumulative relative flexibility of the reactions. Solid lines represent the distribution of relat...
Equilibrium free-energy differences can be computed from nonequilibrium molecular dynamics (MD) simu...