Additional file 1: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Additional file 6: of A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Yonas Tekle (5984270)
Fiona Wood (3499862)

November 2018

Figure S6. Histogram of average distances within genome-matching and nonmatching single-copy eukaryo...

Additional file 3: Table S2. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Summary of statistical parameters for 11 microsatellite loci of Fascioloides magna from North Americ...

Additional file 1: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Table S1. Mastersheet of SSR attributes and genomic information for 719 organisms arranged in evolut...

Additional file 2: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia DessĂŹ (6050357)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela HrÄkovĂĄ (6050366)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Table S2. Distribution (absolute frequencies) of nad1 haplotypes in 17 specimens from five Mediterra...

Additional file 5: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia Dessì (6050414)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela Hrčková (3219552)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Table S4. Estimates of evolutionary divergence over sequence pairs between groups based on the nad1 ...

Additional file 3: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia DessĂŹ (6050357)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela HrÄkovĂĄ (6050366)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Figure S1. Likelihood mapping. a cox1 dataset. b nad1 dataset. For both panels: (i) distribution map...

Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia
Daria Sanna
Marco Casu
Samia Lahmar
Giorgia Dessì
Anna Paola Pipia
Claudia Tamponi
Gabriella Gaglio
Gabriela Hrčková
Domenico Otranto
Antonio Scala

December 2018

Abstract Background This study is the first contribution to the molecular taxonomy of Mesocestoides ...

Additional file 4: of Population genetic structure of Schistosoma bovis in Cameroon

Félicité Djuikwo-Teukeng (3353792)
Alain Kouam Simo (6262682)
Jean-François Allienne (843746)
Olivier Rey (387771)
Arouna Njayou Ngapagna (6262685)
Louis Tchuem-Tchuente (6262688)
Jérôme Boissier (183774)

January 2019

Figure S2. Mitochondrial cox1 maximum likelihood tree based of the S. bovis samples. The code for ea...

Additional file 1: Table S1. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Primer pairs and multiplex panels for 11 microsatellite loci applied in Fascioloides magna genotypin...

Additional file 1: of Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon

Spencer Galen (5126369)
Renato Nunes (5704595)
Paul Sweet (5704598)
Susan Perkins (4744827)

August 2018

Additional details of sampling, methodology, and results. This file contains supplementary methods, ...

Additional file 5: of Cox1 barcoding versus multilocus species delimitation: validation of two mite species with contrasting effective population sizes

Pavel Klimov (3292182)
Maciej Skoracki (6177272)
Andre Bochkov (4037249)

January 2019

Table S2. Within- and among-species genetic distances of 7 loci of 10 putative species. (DOCX 79 kb

Additional file 1: of Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

Emily Kaufman (200541)
Nathan Stone (176940)
Glen Scoles (3448283)
Crystal Hepp (3117699)
Joseph Busch (4676041)
David Wagner (69763)

May 2018

Table S1. Dermacentor variabilis (n = 1053) were obtained from 31 states and provinces. We included ...

Additional file 5: of A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Yonas Tekle (5984270)
Fiona Wood (3499862)

November 2018

Figure S5. Histogram of average distances within ortholog groups, including single- and multi-copy i...

Additional file 1: of Population genetic structure of Schistosoma bovis in Cameroon

Félicité Djuikwo-Teukeng (3353792)
Alain Kouam Simo (6262682)
Jean-François Allienne (843746)
Olivier Rey (387771)
Arouna Njayou Ngapagna (6262685)
Louis Tchuem-Tchuente (6262688)
Jérôme Boissier (183774)

January 2019

Table S1. Details of the schistosomes from different cows that were molecularly characterized using ...

Additional file 1: of Heterogeneous rates of genome rearrangement contributed to the disparity of species richness in Ascomycota

Ahmad Rajeh (5140910)
Jie Lv (235936)
Zhenguo Lin (1984012)

April 2018

Table S1. List of species examined in this study and genome assembly version. (XLSX 16Â kb

Additional file 6: of A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Yonas Tekle (5984270)
Fiona Wood (3499862)

November 2018

Figure S6. Histogram of average distances within genome-matching and nonmatching single-copy eukaryo...

Additional file 3: Table S2. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Summary of statistical parameters for 11 microsatellite loci of Fascioloides magna from North Americ...

Additional file 1: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Table S1. Mastersheet of SSR attributes and genomic information for 719 organisms arranged in evolut...

Additional file 2: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia DessĂŹ (6050357)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela HrÄkovĂĄ (6050366)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Table S2. Distribution (absolute frequencies) of nad1 haplotypes in 17 specimens from five Mediterra...

Additional file 5: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia Dessì (6050414)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela Hrčková (3219552)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Table S4. Estimates of evolutionary divergence over sequence pairs between groups based on the nad1 ...

Additional file 3: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia (725844)
Daria Sanna (428253)
Marco Casu (428260)
Samia Lahmar (85275)
Giorgia DessĂŹ (6050357)
Anna Pipia (6050360)
Claudia Tamponi (6050363)
Gabriella Gaglio (3122895)
Gabriela HrÄkovĂĄ (6050366)
Domenico Otranto (201544)
Antonio Scala (302212)

December 2018

Figure S1. Likelihood mapping. a cox1 dataset. b nad1 dataset. For both panels: (i) distribution map...

Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Antonio Varcasia
Daria Sanna
Marco Casu
Samia Lahmar
Giorgia Dessì
Anna Paola Pipia
Claudia Tamponi
Gabriella Gaglio
Gabriela Hrčková
Domenico Otranto
Antonio Scala

December 2018

Abstract Background This study is the first contribution to the molecular taxonomy of Mesocestoides ...

Additional file 4: of Population genetic structure of Schistosoma bovis in Cameroon

Félicité Djuikwo-Teukeng (3353792)
Alain Kouam Simo (6262682)
Jean-François Allienne (843746)
Olivier Rey (387771)
Arouna Njayou Ngapagna (6262685)
Louis Tchuem-Tchuente (6262688)
Jérôme Boissier (183774)

January 2019

Figure S2. Mitochondrial cox1 maximum likelihood tree based of the S. bovis samples. The code for ea...

Additional file 1: Table S1. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Primer pairs and multiplex panels for 11 microsatellite loci applied in Fascioloides magna genotypin...

Additional file 1: of Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon

Spencer Galen (5126369)
Renato Nunes (5704595)
Paul Sweet (5704598)
Susan Perkins (4744827)

August 2018

Additional details of sampling, methodology, and results. This file contains supplementary methods, ...

Additional file 5: of Cox1 barcoding versus multilocus species delimitation: validation of two mite species with contrasting effective population sizes

Pavel Klimov (3292182)
Maciej Skoracki (6177272)
Andre Bochkov (4037249)

January 2019

Table S2. Within- and among-species genetic distances of 7 loci of 10 putative species. (DOCX 79 kb

Additional file 1: of Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

Emily Kaufman (200541)
Nathan Stone (176940)
Glen Scoles (3448283)
Crystal Hepp (3117699)
Joseph Busch (4676041)
David Wagner (69763)

May 2018

Table S1. Dermacentor variabilis (n = 1053) were obtained from 31 states and provinces. We included ...

Additional file 5: of A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Yonas Tekle (5984270)
Fiona Wood (3499862)

November 2018

Figure S5. Histogram of average distances within ortholog groups, including single- and multi-copy i...

Additional file 1: of Population genetic structure of Schistosoma bovis in Cameroon

Félicité Djuikwo-Teukeng (3353792)
Alain Kouam Simo (6262682)
Jean-François Allienne (843746)
Olivier Rey (387771)
Arouna Njayou Ngapagna (6262685)
Louis Tchuem-Tchuente (6262688)
Jérôme Boissier (183774)

January 2019

Table S1. Details of the schistosomes from different cows that were molecularly characterized using ...

Additional file 1: of Heterogeneous rates of genome rearrangement contributed to the disparity of species richness in Ascomycota

Ahmad Rajeh (5140910)
Jie Lv (235936)
Zhenguo Lin (1984012)

April 2018

Table S1. List of species examined in this study and genome assembly version. (XLSX 16Â kb

Additional file 6: of A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes

Yonas Tekle (5984270)
Fiona Wood (3499862)

November 2018

Figure S6. Histogram of average distances within genome-matching and nonmatching single-copy eukaryo...

Additional file 3: Table S2. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Summary of statistical parameters for 11 microsatellite loci of Fascioloides magna from North Americ...

Additional file 1: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Table S1. Mastersheet of SSR attributes and genomic information for 719 organisms arranged in evolut...

Additional file 1: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Abstract

Extracted data

Additional file 1: of Species delimitation based on mtDNA genes suggests the occurrence of new species of Mesocestoides in the Mediterranean region

Abstract

Extracted data

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