Additional file 5: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnan...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during ...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 1: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete details of the protocols used for library preparation, primer design and sequences, and qPC...

Additional file 2: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Summary of read counts per sample and details of the alignment procedure performed with the STAR 2.5...

Additional file 3: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete result datasets generated by the DIA analysis. The KEGG pathways are sorted by category and...

Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni
R. E. Bucktrout
S. Zhan
A. Geiger
J. C. McCann
R. M. Akers
J. J. Loor

December 2018

Abstract Background To reduce costs of rearing replacement heifers, researchers have focused on decr...

Additional file 1: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Molecular and cellular function of differentially expressed genes of the subcutaneous adipose tissue...

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis and RNA expression in Holstein heifer calves

Hare, K.S.
Leal, Leonel N.
Romao, Josue M.
Hooiveld, G.J.E.J.
Soberon, F.
Berends, H.
Amburgh, Michael E., Van
Martín-Tereso, Javier
Steele, Michael A.

January 2019

The objective of this study was to analyze the mammary gland transcriptome to determine how preweani...

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis, and RNA expression in Holstein heifer calves

Hare, K.S.
Leal, L.N.
Romao, J.M.
Hooiveld, G.J.
Soberon, F.
Berends, H.
Amburgh, Van, M.E.
Martín-Tereso, J.
Steele, M.A.

January 2019

The objective of this study was to analyze the mammary gland transcriptome to determine how preweani...

Additional file 3: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Genes differentially expressed in the subcutaneous adipose of Holstein-Friesian dairy bulls fed on l...

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves

Leal, Leonel N.
Romao, Josue M.
Hooiveld, Guido J.
Soberon, Fernando
Berends, Harma
Boekschoten, Mark V.
Amburgh, Michael E., Van
Martín-Tereso, Javier
Steele, Michael A.

January 2018

Performance of dairy cows can be influenced by early life nutrient supply. Adipose tissue is diet se...

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves.

Leonel N Leal
Josue M Romao
Guido J Hooiveld
Fernando Soberon
Harma Berends
Mark V Boekshoten
Michael E Van Amburgh
Javier Martín-Tereso
Michael A Steele

January 2018

Performance of dairy cows can be influenced by early life nutrient supply. Adipose tissue is diet se...

Transcriptional changes in mesenteric and subcutaneous adipose tissue from Holstein cows in response to plane of dietary energy

Moisá, SJ
Ji, P
Drackley, JK
Rodriguez-Zas, SL
Loor, JJ

December 2017

BackgroundDairy cows can readily overconsume dietary energy during most of the prepartum period, oft...

Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnan...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during ...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 1: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete details of the protocols used for library preparation, primer design and sequences, and qPC...

Additional file 2: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Summary of read counts per sample and details of the alignment procedure performed with the STAR 2.5...

Additional file 3: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete result datasets generated by the DIA analysis. The KEGG pathways are sorted by category and...

Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni
R. E. Bucktrout
S. Zhan
A. Geiger
J. C. McCann
R. M. Akers
J. J. Loor

December 2018

Abstract Background To reduce costs of rearing replacement heifers, researchers have focused on decr...

Additional file 1: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Molecular and cellular function of differentially expressed genes of the subcutaneous adipose tissue...

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis and RNA expression in Holstein heifer calves

Hare, K.S.
Leal, Leonel N.
Romao, Josue M.
Hooiveld, G.J.E.J.
Soberon, F.
Berends, H.
Amburgh, Michael E., Van
Martín-Tereso, Javier
Steele, Michael A.

January 2019

The objective of this study was to analyze the mammary gland transcriptome to determine how preweani...

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis, and RNA expression in Holstein heifer calves

Hare, K.S.
Leal, L.N.
Romao, J.M.
Hooiveld, G.J.
Soberon, F.
Berends, H.
Amburgh, Van, M.E.
Martín-Tereso, J.
Steele, M.A.

January 2019

The objective of this study was to analyze the mammary gland transcriptome to determine how preweani...

Additional file 3: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Genes differentially expressed in the subcutaneous adipose of Holstein-Friesian dairy bulls fed on l...

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves

Leal, Leonel N.
Romao, Josue M.
Hooiveld, Guido J.
Soberon, Fernando
Berends, Harma
Boekschoten, Mark V.
Amburgh, Michael E., Van
Martín-Tereso, Javier
Steele, Michael A.

January 2018

Performance of dairy cows can be influenced by early life nutrient supply. Adipose tissue is diet se...

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves.

Leonel N Leal
Josue M Romao
Guido J Hooiveld
Fernando Soberon
Harma Berends
Mark V Boekshoten
Michael E Van Amburgh
Javier Martín-Tereso
Michael A Steele

January 2018

Performance of dairy cows can be influenced by early life nutrient supply. Adipose tissue is diet se...

Transcriptional changes in mesenteric and subcutaneous adipose tissue from Holstein cows in response to plane of dietary energy

Moisá, SJ
Ji, P
Drackley, JK
Rodriguez-Zas, SL
Loor, JJ

December 2017

BackgroundDairy cows can readily overconsume dietary energy during most of the prepartum period, oft...

Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnan...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during ...

Additional file 5: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

Abstract

Extracted data

Additional file 5: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

Abstract

Extracted data

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