Additional file 1: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Additional file 1: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
JoĂŁo PerdigĂŁo (6525866)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...

Additional file 8: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
João Perdigão (327131)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...

Additional file 1: of Predominance of Uganda genotype of Mycobacterium tuberculosis isolated from Ugandan patients with tuberculous lymphadenitis

Dan Wamala (3451703)
Moses Okee (133435)
Edgar Kigozi (724127)
David Couvin (130640)
Nalin Rastogi (674)
Moses Joloba (230166)
Gunilla Kallenius (73925)

September 2015

Table S1. A summary of genotyping, demographic and epidemiologic data on 121 M. tuberculosis strains...

Additional file 2: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Table S1. Spoligotyping patterns result of M.tb strains collected from Beijing in this study. (DOCX ...

Additional file 3: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Table S3. Drug susceptibility phenotypes of new cases and retreatments. (DOCX 14 kb

Additional file 4: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Detailed information about genotyping patterns and DST results isolated from 1189âM.tb strains in ...

Additional file 2: of Characterization of Mycobacterium tuberculosis isolates from Hebei, China: genotypes and drug susceptibility phenotypes

Yanan Li (94033)
Xinrui Cao (1688581)
Shiming Li (708834)
Hao Wang (39217)
Jianlin Wei (3422417)
Peng Liu (120506)
Jing Wang (1228470)
Zhi Zhang (55283)
Huixia Gao (3422420)
Machao Li (390917)
Kanglin Wan (174163)
Erhei Dai (46397)

March 2016

Detailed information about New and orphan spoligotype patterns isolated from 1017 MTB strains in Heb...

Additional file 1 of Genetic composition and evolution of the prevalent Mycobacterium tuberculosis lineages 2 and 4 in the Chinese and Zhejiang Province populations

Beibei Wu (369317)
Wenlong Zhu (9740233)
Yue Wang (65477)
Qi Wang (22418)
Lin Zhou (141050)
Zhengwei Liu (3452954)
Lijun Bi (121470)
Mathema Barun (11310345)
Barry N. Kreiswirth (7286546)
Liang Chen (73736)
Songhua Chen (537072)
Xiaomeng Wang (348745)
Weibing Wang (11310348)

August 2021

Additional file 1: Table S1. The detail information (run accession, year of collection and demograph...

Additional file 2 of Genetic composition and evolution of the prevalent Mycobacterium tuberculosis lineages 2 and 4 in the Chinese and Zhejiang Province populations

Beibei Wu (369317)
Wenlong Zhu (9740233)
Yue Wang (65477)
Qi Wang (22418)
Lin Zhou (141050)
Zhengwei Liu (3452954)
Lijun Bi (121470)
Mathema Barun (11310345)
Barry N. Kreiswirth (7286546)
Liang Chen (73736)
Songhua Chen (537072)
Xiaomeng Wang (348745)
Weibing Wang (11310348)

August 2021

Additional file 2: Table S2. The detail information (run accession, public year et al.) of the 1154 ...

Additional file 1: of Role of MIRU-VNTR and spoligotyping in assessing the genetic diversity of Mycobacterium tuberculosis in Henan Province, China

Jie Shi (130059)
Danwei Zheng (5712341)
Yankun Zhu (5712344)
Xiaoguang Ma (251269)
Shaohua Wang (1447912)
Hui Li (32376)
Jin Xing (5712347)

September 2018

Figure S1. Genotyping of 668Â M. tuberculosis isolates with 26-locus MIRU-VNTR and spoligotyping. Th...

Additional file 1: of New epidemic cluster of pre-extensively drug resistant isolates of Mycobacterium tuberculosis Ural family emerging in Eastern Europe

Viacheslav Sinkov (5880692)
Oleg Ogarkov (4033247)
Igor Mokrousov (62801)
Yuri Bukin (5880695)
Svetlana Zhdanova (5880698)
Scott Heysell (3639796)

October 2018

Table S1. Information on 149Â M. tuberculosis Ural strains included in this study. Strain ID, drug s...

SNP/RD Typing of Mycobacterium tuberculosis Beijing Strains Reveals Local and Worldwide Disseminated Clonal Complexes.

Schurch, A.C.
Kremer, K.
Hendriks, A.C.
Freyee, B.
McEvoy, C.R.
Crevel, R. van
Boeree, M.J.
Helden, P. van
Warren, R.M.
Siezen, R.J.
Soolingen, D. van

January 2011

Contains fulltext : 96314.pdf (publisher's version ) (Open Access)The Beijing stra...

Additional file 1: of GeneChip analysis of resistant Mycobacterium tuberculosis with previously treated tuberculosis in Changchun

Ming-Jin Zhang (5258756)
Wen-Zhi Ren (4336492)
Xue-Juan Sun (5258753)
Yang Liu (4212112)
Ke-Wei Liu (105591)
Zhong-Hao Ji (4336486)
Wei Gao (2085)
Bao Yuan (585607)

May 2018

Raw data of 2143 simples. Clinical specimens test results from the infectious diseases hospital of C...

Additional file 5: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
João Perdigão (327131)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...

Additional file 2: of First insights on the genetic diversity of MDR Mycobacterium tuberculosis in Lebanon

Balig Panossian (6164099)
Tamara Salloum (3917417)
George Araj (5059463)
Georges Khazen (171939)
Sima Tokajian (3559616)

December 2018

List of M. tuberculosis strains used in this study. Lineages/Sublineages generated using TGS-TB and ...

Additional file 1: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
JoĂŁo PerdigĂŁo (6525866)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...

Additional file 8: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
João Perdigão (327131)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...

Additional file 1: of Predominance of Uganda genotype of Mycobacterium tuberculosis isolated from Ugandan patients with tuberculous lymphadenitis

Dan Wamala (3451703)
Moses Okee (133435)
Edgar Kigozi (724127)
David Couvin (130640)
Nalin Rastogi (674)
Moses Joloba (230166)
Gunilla Kallenius (73925)

September 2015

Table S1. A summary of genotyping, demographic and epidemiologic data on 121 M. tuberculosis strains...

Additional file 2: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Table S1. Spoligotyping patterns result of M.tb strains collected from Beijing in this study. (DOCX ...

Additional file 3: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Table S3. Drug susceptibility phenotypes of new cases and retreatments. (DOCX 14 kb

Additional file 4: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Yi Liu (36759)
Xuxia Zhang (631797)
Yuqing Zhang (32031)
Yong Sun (406434)
Cong Yao (441931)
Wei Wang (17594)
Chuanyou Li (115342)

December 2018

Detailed information about genotyping patterns and DST results isolated from 1189âM.tb strains in ...

Additional file 2: of Characterization of Mycobacterium tuberculosis isolates from Hebei, China: genotypes and drug susceptibility phenotypes

Yanan Li (94033)
Xinrui Cao (1688581)
Shiming Li (708834)
Hao Wang (39217)
Jianlin Wei (3422417)
Peng Liu (120506)
Jing Wang (1228470)
Zhi Zhang (55283)
Huixia Gao (3422420)
Machao Li (390917)
Kanglin Wan (174163)
Erhei Dai (46397)

March 2016

Detailed information about New and orphan spoligotype patterns isolated from 1017 MTB strains in Heb...

Additional file 1 of Genetic composition and evolution of the prevalent Mycobacterium tuberculosis lineages 2 and 4 in the Chinese and Zhejiang Province populations

Beibei Wu (369317)
Wenlong Zhu (9740233)
Yue Wang (65477)
Qi Wang (22418)
Lin Zhou (141050)
Zhengwei Liu (3452954)
Lijun Bi (121470)
Mathema Barun (11310345)
Barry N. Kreiswirth (7286546)
Liang Chen (73736)
Songhua Chen (537072)
Xiaomeng Wang (348745)
Weibing Wang (11310348)

August 2021

Additional file 1: Table S1. The detail information (run accession, year of collection and demograph...

Additional file 2 of Genetic composition and evolution of the prevalent Mycobacterium tuberculosis lineages 2 and 4 in the Chinese and Zhejiang Province populations

Beibei Wu (369317)
Wenlong Zhu (9740233)
Yue Wang (65477)
Qi Wang (22418)
Lin Zhou (141050)
Zhengwei Liu (3452954)
Lijun Bi (121470)
Mathema Barun (11310345)
Barry N. Kreiswirth (7286546)
Liang Chen (73736)
Songhua Chen (537072)
Xiaomeng Wang (348745)
Weibing Wang (11310348)

August 2021

Additional file 2: Table S2. The detail information (run accession, public year et al.) of the 1154 ...

Additional file 1: of Role of MIRU-VNTR and spoligotyping in assessing the genetic diversity of Mycobacterium tuberculosis in Henan Province, China

Jie Shi (130059)
Danwei Zheng (5712341)
Yankun Zhu (5712344)
Xiaoguang Ma (251269)
Shaohua Wang (1447912)
Hui Li (32376)
Jin Xing (5712347)

September 2018

Figure S1. Genotyping of 668Â M. tuberculosis isolates with 26-locus MIRU-VNTR and spoligotyping. Th...

Additional file 1: of New epidemic cluster of pre-extensively drug resistant isolates of Mycobacterium tuberculosis Ural family emerging in Eastern Europe

Viacheslav Sinkov (5880692)
Oleg Ogarkov (4033247)
Igor Mokrousov (62801)
Yuri Bukin (5880695)
Svetlana Zhdanova (5880698)
Scott Heysell (3639796)

October 2018

Table S1. Information on 149Â M. tuberculosis Ural strains included in this study. Strain ID, drug s...

SNP/RD Typing of Mycobacterium tuberculosis Beijing Strains Reveals Local and Worldwide Disseminated Clonal Complexes.

Schurch, A.C.
Kremer, K.
Hendriks, A.C.
Freyee, B.
McEvoy, C.R.
Crevel, R. van
Boeree, M.J.
Helden, P. van
Warren, R.M.
Siezen, R.J.
Soolingen, D. van

January 2011

Contains fulltext : 96314.pdf (publisher's version ) (Open Access)The Beijing stra...

Additional file 1: of GeneChip analysis of resistant Mycobacterium tuberculosis with previously treated tuberculosis in Changchun

Ming-Jin Zhang (5258756)
Wen-Zhi Ren (4336492)
Xue-Juan Sun (5258753)
Yang Liu (4212112)
Ke-Wei Liu (105591)
Zhong-Hao Ji (4336486)
Wei Gao (2085)
Bao Yuan (585607)

May 2018

Raw data of 2143 simples. Clinical specimens test results from the infectious diseases hospital of C...

Additional file 5: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
João Perdigão (327131)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...

Additional file 2: of First insights on the genetic diversity of MDR Mycobacterium tuberculosis in Lebanon

Balig Panossian (6164099)
Tamara Salloum (3917417)
George Araj (5059463)
Georges Khazen (171939)
Sima Tokajian (3559616)

December 2018

List of M. tuberculosis strains used in this study. Lineages/Sublineages generated using TGS-TB and ...

Additional file 1: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
JoĂŁo PerdigĂŁo (6525866)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...

Additional file 8: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Yaa Oppong (6525863)
Jody Phelan (3543014)
João Perdigão (327131)
Diana Machado (327130)
Anabela Miranda (3583904)
Isabel Portugal (327133)
Miguel Viveiros (69123)
Taane Clark (3507860)
Martin Hibberd (269015)

March 2019

Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...

Additional file 1: of Predominance of Uganda genotype of Mycobacterium tuberculosis isolated from Ugandan patients with tuberculous lymphadenitis

Dan Wamala (3451703)
Moses Okee (133435)
Edgar Kigozi (724127)
David Couvin (130640)
Nalin Rastogi (674)
Moses Joloba (230166)
Gunilla Kallenius (73925)

September 2015

Table S1. A summary of genotyping, demographic and epidemiologic data on 121 M. tuberculosis strains...

Additional file 1: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Abstract

Extracted data

Additional file 1: of Characterization of Mycobacterium tuberculosis strains in Beijing, China: drug susceptibility phenotypes and Beijing genotype family transmission

Abstract

Extracted data

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