Additional file 6: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Functional Metabolic Profiling of Microbial Communities Hosted by Carnivorous Pitcher Plants

Kaiser, Joan

April 2021

The carnivorous pitcher plant Sarracenia purpurea hosts microbial communities that break down captur...

Additional file 2: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S2. Rarefaction analysis showing sampling intensity of 40 samples. Random sub-samplings were ...

Additional file 5: of Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Aaron Walsh (4978487)
Fiona Crispie (166390)
Orla O’Sullivan (166383)
Laura Finnegan (4978490)
Marcus Claesson (3421388)
Paul Cotter (802473)

March 2018

Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...

Additional file 4: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S7. Summary of selected protein families (Pfam) based on rpstblastx algorithm. (PDF 410 kb

Additional file 5: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S8. Functional annotation of OTUs (only for those with genus assigment) genes. Annotation was ...

Additional file 2: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S5. a Prokaryotic OTUs distribution in samples. b Methanotropic OTUs distribution in samples (...

Additional file 1: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S1. Source and identification of studies used for comparative meta-analyses in Fig. 1a, b and ...

Additional file 6: Table S2. of Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)

Jessica Goodheart (4539097)
Adam Bazinet (4539103)
Ăngel ValdĂŠs (4539100)
Allen Collins (270694)
Michael Cummings (673809)

October 2017

Trinity-assembly details, including number of transcript fragments and total number of bases assembl...

Data from: DNA metabarcoding reveals changes in the contents of carnivorous plants along an elevation gradient

Littlefair, Joanne E.
Zander, Axel
de Sena Costa, Clara
Clare, Elizabeth L.

August 2018

Resource variation along abiotic gradients influences subsequent trophic interactions and these effe...

Additional file 3: of Relating genomic characteristics to environmental preferences and ubiquity in different microbial taxa

Marta Cobo-SimĂłn (4216825)
Javier Tamames (23643)

June 2017

Plots relating the average genome size of every genus to their average number of 16S rRNA genes. All...

Additional file 1 of Deciphering the gut microbiome of grass carp through multi-omics approach

Ming Li (91180)
Hui Liang (503201)
Hongwei Yang (1367979)
Qianwen Ding (11998214)
Rui Xia (523256)
Jie Chen (5892)
Wenhao Zhou (2855447)
Yalin Yang (765546)
Zhen Zhang (86004)
Yuanyuan Yao (1644640)
Chao Ran (306432)
Zhigang Zhou (2371921)

January 2024

Additional file 1: Supplementary Figure S1. Experimental design and rarefaction curve analysis of mi...

Additional file 6: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S6. Nonlinear multidimensional scaling analysis of 40 phyllosphere algal community structures...

Additional file 2: of Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

Ilias Lagkouvardos (753901)
Till Lesker (5590802)
Thomas Hitch (4792731)
Eric Gálvez (6381089)
Nathiana Smit (6381074)
Klaus Neuhaus (134143)
Jun Wang (5906)
John Baines (2632834)
Birte Abt (158167)
Bärbel Stecher (78807)
Jörg Overmann (140902)
Till Strowig (86289)
Thomas Clavel (374686)

February 2019

Figure S1. KEGG-based analysis of S24-7 functions. A heatmap of differential completeness of KEGG mo...

Additional file 4: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S4. The alpha diversity of 10 host trees, including Richness (number of OTUs), Abundance (num...

Data and R code for: Metabarcoding as a tool for investigating arthropod diversity in Nepenthes pitcher plants

Bittleston, Leonora

January 2014

The biodiversity of tropical forests consists primarily of small organisms that are difficult to det...

Functional Metabolic Profiling of Microbial Communities Hosted by Carnivorous Pitcher Plants

Kaiser, Joan

April 2021

The carnivorous pitcher plant Sarracenia purpurea hosts microbial communities that break down captur...

Additional file 2: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S2. Rarefaction analysis showing sampling intensity of 40 samples. Random sub-samplings were ...

Additional file 5: of Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Aaron Walsh (4978487)
Fiona Crispie (166390)
Orla O’Sullivan (166383)
Laura Finnegan (4978490)
Marcus Claesson (3421388)
Paul Cotter (802473)

March 2018

Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...

Additional file 4: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S7. Summary of selected protein families (Pfam) based on rpstblastx algorithm. (PDF 410 kb

Additional file 5: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S8. Functional annotation of OTUs (only for those with genus assigment) genes. Annotation was ...

Additional file 2: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S5. a Prokaryotic OTUs distribution in samples. b Methanotropic OTUs distribution in samples (...

Additional file 1: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Dagmara Sirová (5130959)
Jiří Bárta (547462)
Karel Šimek (176502)
Thomas Posch (444623)
Jiří Pech (6093119)
James Stone (3432734)
Jakub Borovec (2663791)
Lubomír Adamec (6093122)
Jaroslav Vrba (6093125)

December 2018

Table S1. Source and identification of studies used for comparative meta-analyses in Fig. 1a, b and ...

Additional file 6: Table S2. of Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)

Jessica Goodheart (4539097)
Adam Bazinet (4539103)
Ăngel ValdĂŠs (4539100)
Allen Collins (270694)
Michael Cummings (673809)

October 2017

Trinity-assembly details, including number of transcript fragments and total number of bases assembl...

Data from: DNA metabarcoding reveals changes in the contents of carnivorous plants along an elevation gradient

Littlefair, Joanne E.
Zander, Axel
de Sena Costa, Clara
Clare, Elizabeth L.

August 2018

Resource variation along abiotic gradients influences subsequent trophic interactions and these effe...

Additional file 3: of Relating genomic characteristics to environmental preferences and ubiquity in different microbial taxa

Marta Cobo-SimĂłn (4216825)
Javier Tamames (23643)

June 2017

Plots relating the average genome size of every genus to their average number of 16S rRNA genes. All...

Additional file 1 of Deciphering the gut microbiome of grass carp through multi-omics approach

Ming Li (91180)
Hui Liang (503201)
Hongwei Yang (1367979)
Qianwen Ding (11998214)
Rui Xia (523256)
Jie Chen (5892)
Wenhao Zhou (2855447)
Yalin Yang (765546)
Zhen Zhang (86004)
Yuanyuan Yao (1644640)
Chao Ran (306432)
Zhigang Zhou (2371921)

January 2024

Additional file 1: Supplementary Figure S1. Experimental design and rarefaction curve analysis of mi...

Additional file 6: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S6. Nonlinear multidimensional scaling analysis of 40 phyllosphere algal community structures...

Additional file 2: of Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

Ilias Lagkouvardos (753901)
Till Lesker (5590802)
Thomas Hitch (4792731)
Eric Gálvez (6381089)
Nathiana Smit (6381074)
Klaus Neuhaus (134143)
Jun Wang (5906)
John Baines (2632834)
Birte Abt (158167)
Bärbel Stecher (78807)
Jörg Overmann (140902)
Till Strowig (86289)
Thomas Clavel (374686)

February 2019

Figure S1. KEGG-based analysis of S24-7 functions. A heatmap of differential completeness of KEGG mo...

Additional file 4: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S4. The alpha diversity of 10 host trees, including Richness (number of OTUs), Abundance (num...

Data and R code for: Metabarcoding as a tool for investigating arthropod diversity in Nepenthes pitcher plants

Bittleston, Leonora

January 2014

The biodiversity of tropical forests consists primarily of small organisms that are difficult to det...

Functional Metabolic Profiling of Microbial Communities Hosted by Carnivorous Pitcher Plants

Kaiser, Joan

April 2021

The carnivorous pitcher plant Sarracenia purpurea hosts microbial communities that break down captur...

Additional file 2: of Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene

Huan Zhu (290418)
Shuyin Li (6100628)
Zhengyu Hu (290424)
Guoxiang Liu (290422)

December 2018

Figure S2. Rarefaction analysis showing sampling intensity of 40 samples. Random sub-samplings were ...

Additional file 5: of Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Aaron Walsh (4978487)
Fiona Crispie (166390)
Orla O’Sullivan (166383)
Laura Finnegan (4978490)
Marcus Claesson (3421388)
Paul Cotter (802473)

March 2018

Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...

Additional file 6: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Abstract

Extracted data

Additional file 6: of Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Abstract

Extracted data

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