Additional file 3: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Additional file 3: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Table S2. Enrichment analysis using KEGG pathways in the STRING web tool. (DOCX 14 kb

Additional file 1: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Figure S1. Quality control of the proteins identified by LC-MS. A: normal distribution of 10 ppm err...

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 1: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Table S2. The intracellular metabolites of Lactobacillus plantarum identified by GC-MS that differ b...

Additional file 4: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S2. Classification of the identified proteins by KEGG database, and the thirteen most signifi...

Additional file 5: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

16S rRNA gene sequence of Lactobacillus plantarum. The strain with high productivity of protease was...

Additional file 2: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S1. Multivariate statistical analysis for the metabolites between theÂ control and experiment...

A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming
Jiaojiao Han
Yanyan Li
Chenyang Lu
Dihong Qiu
Ye Li
Jun Zhou
Xiurong Su

December 2018

Abstract Background Lactobacillus plantarum, a versatile lactic acid-fermenting bacterium, isolated ...

Proteomic analysis of log to stationary growth phase Lactobacillus plantarum cells and a 2-DE database

Cohen, D.P.
Renes, J.W.
Bouwman, F.G.
Zoetendaal, E.G.
Mariman, E.C.M.
de Vos, W.M.
Vaughan, E.E.

January 2006

Lactobacillus plantarum is part of the natural microbiota of many food fermentations as well as the ...

Additional file 1 of Deciphering the gut microbiome of grass carp through multi-omics approach

Ming Li (91180)
Hui Liang (503201)
Hongwei Yang (1367979)
Qianwen Ding (11998214)
Rui Xia (523256)
Jie Chen (5892)
Wenhao Zhou (2855447)
Yalin Yang (765546)
Zhen Zhang (86004)
Yuanyuan Yao (1644640)
Chao Ran (306432)
Zhigang Zhou (2371921)

January 2024

Additional file 1: Supplementary Figure S1. Experimental design and rarefaction curve analysis of mi...

Functional analysis of Lactobacillus plantarum WCFS1 : a proteomic approach

Cohen, D.P.A.

January 2007

Lactic Acid Bacteria (LAB) are involved in the production of fermented foods whereby they improve th...

Analysis of metabolomic profile of fermented Orostachys japonicus A. Berger by capillary electrophoresis time of flight mass spectrometry.

Gitishree Das
Jayanta Kumar Patra
Sun-Young Lee
Changgeon Kim
Jae Gyu Park
Kwang-Hyun Baek

January 2017

Microbial cell performance in food biotechnological processes has become an important concern for im...

Transcriptomes Reveal Genetic Signatures Underlying Physiological Variations Imposed by Different Fermentation Conditions in Lactobacillus plantarum.

Bron, P.A.
Wels, M.W.
Bongers, R.S.
Bokhorst-van de Veen, H. van
Wiersma, A.
Overmars, L.
Marco, M.L.
Kleerebezem, M.

January 2012

Contains fulltext : 110027.pdf (publisher's version ) (Open Access)Lactic acid bac...

Table_3_Proteomic Analysis of Lactobacillus nagelii in the Presence of Saccharomyces cerevisiae Isolated From Water Kefir and Comparison With Lactobacillus hordei.docx

Julia Bechtner (6408536)
Di Xu (1443394)
Jürgen Behr (272687)
Christina Ludwig (2029177)
Rudi F. Vogel (1825852)

February 2019

Water kefir is a slightly alcoholic and traditionally fermented beverage, which is prepared from suc...

Additional file 7: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Table S5. Complete list of proteins that were up-regulated and down-regulated in fish-adapted and hu...

Additional file 3: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Table S2. Enrichment analysis using KEGG pathways in the STRING web tool. (DOCX 14 kb

Additional file 1: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Figure S1. Quality control of the proteins identified by LC-MS. A: normal distribution of 10 ppm err...

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 1: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Table S2. The intracellular metabolites of Lactobacillus plantarum identified by GC-MS that differ b...

Additional file 4: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S2. Classification of the identified proteins by KEGG database, and the thirteen most signifi...

Additional file 5: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

16S rRNA gene sequence of Lactobacillus plantarum. The strain with high productivity of protease was...

Additional file 2: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S1. Multivariate statistical analysis for the metabolites between theÂ control and experiment...

A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming
Jiaojiao Han
Yanyan Li
Chenyang Lu
Dihong Qiu
Ye Li
Jun Zhou
Xiurong Su

December 2018

Abstract Background Lactobacillus plantarum, a versatile lactic acid-fermenting bacterium, isolated ...

Proteomic analysis of log to stationary growth phase Lactobacillus plantarum cells and a 2-DE database

Cohen, D.P.
Renes, J.W.
Bouwman, F.G.
Zoetendaal, E.G.
Mariman, E.C.M.
de Vos, W.M.
Vaughan, E.E.

January 2006

Lactobacillus plantarum is part of the natural microbiota of many food fermentations as well as the ...

Additional file 1 of Deciphering the gut microbiome of grass carp through multi-omics approach

Ming Li (91180)
Hui Liang (503201)
Hongwei Yang (1367979)
Qianwen Ding (11998214)
Rui Xia (523256)
Jie Chen (5892)
Wenhao Zhou (2855447)
Yalin Yang (765546)
Zhen Zhang (86004)
Yuanyuan Yao (1644640)
Chao Ran (306432)
Zhigang Zhou (2371921)

January 2024

Additional file 1: Supplementary Figure S1. Experimental design and rarefaction curve analysis of mi...

Functional analysis of Lactobacillus plantarum WCFS1 : a proteomic approach

Cohen, D.P.A.

January 2007

Lactic Acid Bacteria (LAB) are involved in the production of fermented foods whereby they improve th...

Analysis of metabolomic profile of fermented Orostachys japonicus A. Berger by capillary electrophoresis time of flight mass spectrometry.

Gitishree Das
Jayanta Kumar Patra
Sun-Young Lee
Changgeon Kim
Jae Gyu Park
Kwang-Hyun Baek

January 2017

Microbial cell performance in food biotechnological processes has become an important concern for im...

Transcriptomes Reveal Genetic Signatures Underlying Physiological Variations Imposed by Different Fermentation Conditions in Lactobacillus plantarum.

Bron, P.A.
Wels, M.W.
Bongers, R.S.
Bokhorst-van de Veen, H. van
Wiersma, A.
Overmars, L.
Marco, M.L.
Kleerebezem, M.

January 2012

Contains fulltext : 110027.pdf (publisher's version ) (Open Access)Lactic acid bac...

Table_3_Proteomic Analysis of Lactobacillus nagelii in the Presence of Saccharomyces cerevisiae Isolated From Water Kefir and Comparison With Lactobacillus hordei.docx

Julia Bechtner (6408536)
Di Xu (1443394)
Jürgen Behr (272687)
Christina Ludwig (2029177)
Rudi F. Vogel (1825852)

February 2019

Water kefir is a slightly alcoholic and traditionally fermented beverage, which is prepared from suc...

Additional file 7: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Table S5. Complete list of proteins that were up-regulated and down-regulated in fish-adapted and hu...

Additional file 3: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Table S2. Enrichment analysis using KEGG pathways in the STRING web tool. (DOCX 14 kb

Additional file 1: of Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach

Guilherme Tavares (6182255)
Felipe Pereira (3408533)
Gustavo Barony (6182258)
Cristiana Rezende (6182261)
Wanderson Silva (3441392)
Gustavo Souza (3475532)
Thiago Verano-Braga (1359996)
Vasco Azevedo (104560)
Carlos Leal (3408566)
Henrique Figueiredo (3408554)

January 2019

Figure S1. Quality control of the proteins identified by LC-MS. A: normal distribution of 10 ppm err...

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 3: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Abstract

Extracted data

Additional file 3: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Abstract

Extracted data

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