Additional file 4: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Additional file 4: Table S3. of Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina

Min Chen (147733)
Zhimin Cao (3429407)

September 2015

Differentially expressed miRNAs from P. szechuanica and target gene functional annotations. (XLSX 31...

Additional file 1: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

Loris Pratx (5173871)
Corinne Rancurel (47753)
Martine Da Rocha (115956)
Etienne Danchin (2912072)
Philippe Castagnone-Sereno (158157)
Pierre Abad (115959)
Laetitia Perfus-Barbeoch (478461)

May 2018

Table S1. Reference dataset of 716 known epigenetic factors in 6 model species. (XLSX 48Â kb

Additional file 4: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S4. Top 30 most highly represented genes in the gland cells tissues. SP: presence or absence o...

Additional file 5: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S4. Lists of DC-clusters exclusively expressed in galls or roots at 7 and 14 dpi and located w...

Additional file 7: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S6. List of DC-clusters differentially expressed (DE) in galls versus uninfected roots at 7 dp...

Additional file 6: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S5. Number and proportion of differentially expressed (DE) DC-clusters located in a gene body ...

Additional file 8: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S7 List of DC-clusters differentially expressed (DE) in galls versus uninfected roots at 14 dp...

Additional file 9: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S8. List of DC-clusters differentially expressed (DE) in galls versus uninfected root at 7 and...

Additional file 3: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S2. Selection of clusters differentially expressed (DE) in galls at 7 and 14dpi. (XLSX 12 kb

Additional file 1: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Clémence Medina (6100814)
Martine da Rocha (6100817)
Marc Magliano (223262)
Alizée Raptopoulo (6100820)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
Stéphanie Jaubert-Possamai (36467)

December 2018

Figure S1. Percentage of reads of 20, 21, 22, 23, 24 nt within each category of DicerCall clusters i...

Additional file 5: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S5. Limited overlap (venny diagram) between the top most abundant thirty genes represented in ...

Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Magliano, Marc
Raptopoulo, Alizée
Marteu, Nathalie
Lebrigand, Kevin
Abad, Pierre
Favery, Bruno

January 2018

BackgroundRoot-knot nematodes (RKN), genus Meloidogyne, are plant parasitic worms that have the abil...

Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Shirin Seifbarghi (3877354)
M. Borhan (3484328)
Yangdou Wei (168452)
Cathy Coutu (455473)
Stephen Robinson (425911)
Dwayne Hegedus (455471)

March 2017

Clustering of differentially expressed genes based on expression patterns relative to time of inocul...

Additional file 3: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S3. RNAseq mapped data from the two samples sequenced (BX-1, BX-2). (PDF 22 kb

Additional file 6: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S6. Bioinformatic pipeline used for the in silico identification of DNA motifs in the promoter...

Additional file 4: Table S3. of Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina

Min Chen (147733)
Zhimin Cao (3429407)

September 2015

Differentially expressed miRNAs from P. szechuanica and target gene functional annotations. (XLSX 31...

Additional file 1: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

Loris Pratx (5173871)
Corinne Rancurel (47753)
Martine Da Rocha (115956)
Etienne Danchin (2912072)
Philippe Castagnone-Sereno (158157)
Pierre Abad (115959)
Laetitia Perfus-Barbeoch (478461)

May 2018

Table S1. Reference dataset of 716 known epigenetic factors in 6 model species. (XLSX 48Â kb

Additional file 4: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S4. Top 30 most highly represented genes in the gland cells tissues. SP: presence or absence o...

Additional file 5: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S4. Lists of DC-clusters exclusively expressed in galls or roots at 7 and 14 dpi and located w...

Additional file 7: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S6. List of DC-clusters differentially expressed (DE) in galls versus uninfected roots at 7 dp...

Additional file 6: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S5. Number and proportion of differentially expressed (DE) DC-clusters located in a gene body ...

Additional file 8: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S7 List of DC-clusters differentially expressed (DE) in galls versus uninfected roots at 14 dp...

Additional file 9: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S8. List of DC-clusters differentially expressed (DE) in galls versus uninfected root at 7 and...

Additional file 3: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S2. Selection of clusters differentially expressed (DE) in galls at 7 and 14dpi. (XLSX 12 kb

Additional file 1: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Clémence Medina (6100814)
Martine da Rocha (6100817)
Marc Magliano (223262)
Alizée Raptopoulo (6100820)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
Stéphanie Jaubert-Possamai (36467)

December 2018

Figure S1. Percentage of reads of 20, 21, 22, 23, 24 nt within each category of DicerCall clusters i...

Additional file 5: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S5. Limited overlap (venny diagram) between the top most abundant thirty genes represented in ...

Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Magliano, Marc
Raptopoulo, Alizée
Marteu, Nathalie
Lebrigand, Kevin
Abad, Pierre
Favery, Bruno

January 2018

BackgroundRoot-knot nematodes (RKN), genus Meloidogyne, are plant parasitic worms that have the abil...

Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Shirin Seifbarghi (3877354)
M. Borhan (3484328)
Yangdou Wei (168452)
Cathy Coutu (455473)
Stephen Robinson (425911)
Dwayne Hegedus (455471)

March 2017

Clustering of differentially expressed genes based on expression patterns relative to time of inocul...

Additional file 3: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S3. RNAseq mapped data from the two samples sequenced (BX-1, BX-2). (PDF 22 kb

Additional file 6: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S6. Bioinformatic pipeline used for the in silico identification of DNA motifs in the promoter...

Additional file 4: Table S3. of Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina

Min Chen (147733)
Zhimin Cao (3429407)

September 2015

Differentially expressed miRNAs from P. szechuanica and target gene functional annotations. (XLSX 31...

Additional file 1: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

Loris Pratx (5173871)
Corinne Rancurel (47753)
Martine Da Rocha (115956)
Etienne Danchin (2912072)
Philippe Castagnone-Sereno (158157)
Pierre Abad (115959)
Laetitia Perfus-Barbeoch (478461)

May 2018

Table S1. Reference dataset of 716 known epigenetic factors in 6 model species. (XLSX 48Â kb

Additional file 4: of STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus

Margarida Espada (302655)
Sebastian Eves-van den Akker (515790)
Tom Maier (5567603)
Vijayapalani Paramasivan (5567606)
Thomas Baum (406296)
Manuel Mota (281005)
John Jones (2102023)

July 2018

Table S4. Top 30 most highly represented genes in the gland cells tissues. SP: presence or absence o...

Additional file 4: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Abstract

Extracted data

Additional file 4: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Abstract

Extracted data

Related items

Related items