Loci Information for short MIRU-VNTR. List of Loci taken into account for the analysis of the short mycobacterial interspersed repeat units variable number of tandem repeats (sMIRU-VNTR) analysis done on the TGS-TB web server. (PDF 197 kb
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Statistical association of major MTBC lineages and extrapulmonary site of infections. (PDF 112 kb
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Repeat regions on M. tuberculosis H37Rv genome. Repeat regions of H37Rv excluded from the analysis o...
List of M. tuberculosis strains used in this study. Lineages/Sublineages generated using TGS-TB and ...
Results of TGS-TB for in silico detection of IS6110 insertion sites, spoligotyping based on 43 space...
Figure S1. Genotyping of 668Â M. tuberculosis isolates with 26-locus MIRU-VNTR and spoligotyping. Th...
Comparison of Individual MIRU-VNTR Loci through the Shannon Diversity Index and Shannon Evenness. Th...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Lineage-specific SNPs for MTB Uganda family, MTB lineage 4 and MTB lineage 3. (DOCX 20 kb
Strain information and full results table for clinically-derived Malawi samples, in silico replicate...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Coverage plots illustrating four Regions of Differences (RDs) in clinically-derived Malawi strains. ...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
Table S1. Sequencing statistics of the 18Â M. tuberculosis isolates. Note: A, B, C, and D indicate t...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Statistical association of major MTBC lineages and extrapulmonary site of infections. (PDF 112 kb
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Repeat regions on M. tuberculosis H37Rv genome. Repeat regions of H37Rv excluded from the analysis o...
List of M. tuberculosis strains used in this study. Lineages/Sublineages generated using TGS-TB and ...
Results of TGS-TB for in silico detection of IS6110 insertion sites, spoligotyping based on 43 space...
Figure S1. Genotyping of 668Â M. tuberculosis isolates with 26-locus MIRU-VNTR and spoligotyping. Th...
Comparison of Individual MIRU-VNTR Loci through the Shannon Diversity Index and Shannon Evenness. Th...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Lineage-specific SNPs for MTB Uganda family, MTB lineage 4 and MTB lineage 3. (DOCX 20 kb
Strain information and full results table for clinically-derived Malawi samples, in silico replicate...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Coverage plots illustrating four Regions of Differences (RDs) in clinically-derived Malawi strains. ...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
Table S1. Sequencing statistics of the 18Â M. tuberculosis isolates. Note: A, B, C, and D indicate t...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Statistical association of major MTBC lineages and extrapulmonary site of infections. (PDF 112 kb
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...