Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Additional file 2: of Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity

Joke Dols (3478088)
Douwe Molenaar (37991)
Jannie van der Helm (3478079)
Martien Caspers (568467)
Alie de Kat Angelino-Bart (3478082)
Frank Schuren (126104)
Adrianus Speksnijder (3478085)
Hans Westerhoff (3478097)
Jan Richardus (236913)
Mathilde Boon (3478094)
Gregor Reid (163342)
Henry de Vries (3478091)
Remco Kort (2446096)

April 2016

The 16S rRNA amplicon sequencing data (DNA sequence, and number of reads) and the family, genus and ...

Additional file 5: of Prevalence and distribution of Gardnerella vaginalis subgroups in women with and without bacterial vaginosis

Migle Janulaitiene (4070005)
Virginija Paliulyte (4069999)
Svitrigaile Grinceviciene (4070002)
Jolita Zakareviciene (4070011)
Alma Vladisauskiene (4069996)
Agne Marcinkute (4070008)
Milda Pleckaityte (497056)

June 2017

Data analysis comparing the detection frequency of four G. vaginalis clades by clade-specific PCR as...

Additional file 1: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

Community States are Consistent between Datasets. Heatmap displaying mCST and sequencing data from b...

Additional file 4: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S3. Boxplot of richness and Shannon diversity index in the two subgroups of the A − N− group....

Additional file 3: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S2. The Pearson correlation coefficients between richness and Shannon diversity index. (PDF 4...

Additional file 8: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S7. Correlation network of vaginal microbiota in the Aâ+âN* group. (PDF 202âkb

Additional file 11: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S9. Boxplots of 12 predictive functional categories that differed significantly among Nugent ...

Additional file 6: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S5. Hierarchical clustering method with Bray-Curtis metric. (PDF 368âkb

Additional file 10: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S8. Principal component analysis of 32 predictive functional modules using PICRUSt in level 3...

Additional file 5: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S4. Principal coordinate analysis (PCoA) plots of vaginal bacterial communities. The PCoA plo...

Additional file 3: Figure S2. of The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Cornelia Gottschick (2624959)
Zhi-Luo Deng (1880209)
Marius Vital (559569)
Clarissa Masur (267880)
Christoph Abels (2624956)
Dietmar Pieper (3502784)
Irene Wagner-DĂśbler (4355464)

August 2017

Rarefaction curves of all samples. Samples were grouped according to healthy male, healthy female, i...

Additional file 3: Table S3. of Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis

Marcela Zozaya (199780)
Michael Ferris (347884)
Julia Siren (697132)
Rebecca Lillis (95319)
Leann Myers (37795)
M. Nsuami (3420011)
A. Eren (3420008)
Jonathan Brown (131720)
Christopher Taylor (3254376)
David Martin (3178)

April 2016

Average percent abundance of selected OTUs in vaginal specimens of BV- and normal-women, and in peni...

Additional file 2: of An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

Abigail Armstrong (5933333)
Michael Shaffer (5933336)
Nichole Nusbacher (5933339)
Christine Griesmer (5933342)
Suzanne Fiorillo (5933345)
Jennifer Schneider (73619)
C. Preston Neff (349770)
Sam Li (5933348)
Andrew Fontenot (5933351)
Thomas Campbell (5301196)
Brent Palmer (5933354)
Catherine Lozupone (21305)

November 2018

Table S2. Table of statistical analyses of differences in parameters across groups in Table 2. (XLSX...

Additional file 1: Figure S1. of The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Cornelia Gottschick (2624959)
Zhi-Luo Deng (1880209)
Marius Vital (559569)
Clarissa Masur (267880)
Christoph Abels (2624956)
Dietmar Pieper (3502784)
Irene Wagner-Döbler (2258)

August 2017

Principle coordinate analysis of all samples from healthy participants. Samples are colored accordin...

Additional file 3: of Prevalence and distribution of Gardnerella vaginalis subgroups in women with and without bacterial vaginosis

Migle Janulaitiene (4070005)
Virginija Paliulyte (4069999)
Svitrigaile Grinceviciene (4070002)
Jolita Zakareviciene (4070011)
Alma Vladisauskiene (4069996)
Agne Marcinkute (4070008)
Milda Pleckaityte (497056)

June 2017

Data analysis comparing the detection frequency of microorganisms by PCR assays in BV-positive, part...

Additional file 2: of Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity

Joke Dols (3478088)
Douwe Molenaar (37991)
Jannie van der Helm (3478079)
Martien Caspers (568467)
Alie de Kat Angelino-Bart (3478082)
Frank Schuren (126104)
Adrianus Speksnijder (3478085)
Hans Westerhoff (3478097)
Jan Richardus (236913)
Mathilde Boon (3478094)
Gregor Reid (163342)
Henry de Vries (3478091)
Remco Kort (2446096)

April 2016

The 16S rRNA amplicon sequencing data (DNA sequence, and number of reads) and the family, genus and ...

Additional file 5: of Prevalence and distribution of Gardnerella vaginalis subgroups in women with and without bacterial vaginosis

Migle Janulaitiene (4070005)
Virginija Paliulyte (4069999)
Svitrigaile Grinceviciene (4070002)
Jolita Zakareviciene (4070011)
Alma Vladisauskiene (4069996)
Agne Marcinkute (4070008)
Milda Pleckaityte (497056)

June 2017

Data analysis comparing the detection frequency of four G. vaginalis clades by clade-specific PCR as...

Additional file 1: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

Community States are Consistent between Datasets. Heatmap displaying mCST and sequencing data from b...

Additional file 4: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S3. Boxplot of richness and Shannon diversity index in the two subgroups of the A − N− group....

Additional file 3: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S2. The Pearson correlation coefficients between richness and Shannon diversity index. (PDF 4...

Additional file 8: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S7. Correlation network of vaginal microbiota in the Aâ+âN* group. (PDF 202âkb

Additional file 11: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S9. Boxplots of 12 predictive functional categories that differed significantly among Nugent ...

Additional file 6: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S5. Hierarchical clustering method with Bray-Curtis metric. (PDF 368âkb

Additional file 10: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S8. Principal component analysis of 32 predictive functional modules using PICRUSt in level 3...

Additional file 5: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Hui-Mei Chen (137029)
Tzu-Hao Chang (19304)
Feng-Mao Lin (6133)
Chao Liang (420436)
Chih-Min Chiu (650344)
Tzu-Ling Yang (650346)
Ting Yang (189879)
Chia-Yen Huang (295070)
Yeong-Nan Cheng (6167801)
Yi-An Chang (650348)
Po-Ya Chang (4533559)
Shun-Long Weng (149130)

January 2019

Figure S4. Principal coordinate analysis (PCoA) plots of vaginal bacterial communities. The PCoA plo...

Additional file 3: Figure S2. of The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Cornelia Gottschick (2624959)
Zhi-Luo Deng (1880209)
Marius Vital (559569)
Clarissa Masur (267880)
Christoph Abels (2624956)
Dietmar Pieper (3502784)
Irene Wagner-DĂśbler (4355464)

August 2017

Rarefaction curves of all samples. Samples were grouped according to healthy male, healthy female, i...

Additional file 3: Table S3. of Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis

Marcela Zozaya (199780)
Michael Ferris (347884)
Julia Siren (697132)
Rebecca Lillis (95319)
Leann Myers (37795)
M. Nsuami (3420011)
A. Eren (3420008)
Jonathan Brown (131720)
Christopher Taylor (3254376)
David Martin (3178)

April 2016

Average percent abundance of selected OTUs in vaginal specimens of BV- and normal-women, and in peni...

Additional file 2: of An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

Abigail Armstrong (5933333)
Michael Shaffer (5933336)
Nichole Nusbacher (5933339)
Christine Griesmer (5933342)
Suzanne Fiorillo (5933345)
Jennifer Schneider (73619)
C. Preston Neff (349770)
Sam Li (5933348)
Andrew Fontenot (5933351)
Thomas Campbell (5301196)
Brent Palmer (5933354)
Catherine Lozupone (21305)

November 2018

Table S2. Table of statistical analyses of differences in parameters across groups in Table 2. (XLSX...

Additional file 1: Figure S1. of The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Cornelia Gottschick (2624959)
Zhi-Luo Deng (1880209)
Marius Vital (559569)
Clarissa Masur (267880)
Christoph Abels (2624956)
Dietmar Pieper (3502784)
Irene Wagner-Döbler (2258)

August 2017

Principle coordinate analysis of all samples from healthy participants. Samples are colored accordin...

Additional file 3: of Prevalence and distribution of Gardnerella vaginalis subgroups in women with and without bacterial vaginosis

Migle Janulaitiene (4070005)
Virginija Paliulyte (4069999)
Svitrigaile Grinceviciene (4070002)
Jolita Zakareviciene (4070011)
Alma Vladisauskiene (4069996)
Agne Marcinkute (4070008)
Milda Pleckaityte (497056)

June 2017

Data analysis comparing the detection frequency of microorganisms by PCR assays in BV-positive, part...

Additional file 2: of Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity

Joke Dols (3478088)
Douwe Molenaar (37991)
Jannie van der Helm (3478079)
Martien Caspers (568467)
Alie de Kat Angelino-Bart (3478082)
Frank Schuren (126104)
Adrianus Speksnijder (3478085)
Hans Westerhoff (3478097)
Jan Richardus (236913)
Mathilde Boon (3478094)
Gregor Reid (163342)
Henry de Vries (3478091)
Remco Kort (2446096)

April 2016

The 16S rRNA amplicon sequencing data (DNA sequence, and number of reads) and the family, genus and ...

Additional file 5: of Prevalence and distribution of Gardnerella vaginalis subgroups in women with and without bacterial vaginosis

Migle Janulaitiene (4070005)
Virginija Paliulyte (4069999)
Svitrigaile Grinceviciene (4070002)
Jolita Zakareviciene (4070011)
Alma Vladisauskiene (4069996)
Agne Marcinkute (4070008)
Milda Pleckaityte (497056)

June 2017

Data analysis comparing the detection frequency of four G. vaginalis clades by clade-specific PCR as...

Additional file 1: of The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus

Alison Vrbanac (4900219)
Angelica Riestra (6010976)
Alison Coady (796957)
Rob Knight (11635)
Victor Nizet (49921)
Kathryn Patras (6010979)

November 2018

Community States are Consistent between Datasets. Heatmap displaying mCST and sequencing data from b...

Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Abstract

Extracted data

Additional file 2: of Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis

Abstract

Extracted data

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