Additional file 1: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

Table S1. Expression quantitative trait loci (eQTL) mapped for longissimus dorsi muscle transcripts from the MSUPRP (n = 168). Table S2. Phenotypic QTL identified in the F2 MSUPRP. Table S3. Results of conditional analysis for expression QTL co-localized with phenotypic QTL. Table S4. Pearson correlations of genes associated with the H3GA0052416 marker on SSC15 and protein percent. Table S5. Conditional analysis: PRKAG3 SNP effect on eQTL gene’s expression. Table S6. Comparison of RT-qPCR and RNA-seq CHRNA9 gene expression association with SNP DIAS0000678. Table S7. Summary statistics for phenotypic traits for the MSUPRP and the subsample used in this study. (XLSX 200 kb