Additional file 1: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Additional file 1: of Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate

Beide Fu (214322)
Xiaomu Yu (500657)
Jingou Tong (500658)
Meixia Pang (5049500)
Ying Zhou (25031)
Qingshan Liu (1286793)
Wenjing Tao (239332)

April 2019

Table S1. KEGG enrichment analysis of highly expressed genes in liver tissue. (XLSX 13 kb

Additional file 4: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Panther database gene set enrichment analysis (GSEA) comparing differences in GO ca...

Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Athimed El Taher (3331803)
Nicolás Lichilín (6206306)
Walter Salzburger (15544)
Astrid Böhne (3408194)

January 2019

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. T...

Additional file 2: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Table S3. KEGG annotation of the G. przewalskii reference transcriptome. (XLSX 180 kb

Additional file 8: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Table S9. Correlation coefficients between modules and sample groups with corresponding p-values. (X...

Additional file 7: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Figure S1. Eigengene expression pattern of each module. The a-axis represented the individual sample...

Additional file 2: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in large fish. FDR significant genes used for the GSEA are highlighte...

Additional file 9: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in December fish. FDR significant genes used for the GSEA are highlig...

Additional file 8: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in September fish. FDR significant genes used for the GSEA are highli...

Additional file 14: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 11: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in female fish. FDR significant genes used for the GSEA are highlight...

Additional file 12: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in male fish. FDR significant genes used for the GSEA are highlighted...

Additional file 15: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 5: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 6: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 1: of Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate

Beide Fu (214322)
Xiaomu Yu (500657)
Jingou Tong (500658)
Meixia Pang (5049500)
Ying Zhou (25031)
Qingshan Liu (1286793)
Wenjing Tao (239332)

April 2019

Table S1. KEGG enrichment analysis of highly expressed genes in liver tissue. (XLSX 13 kb

Additional file 4: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Panther database gene set enrichment analysis (GSEA) comparing differences in GO ca...

Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Athimed El Taher (3331803)
Nicolás Lichilín (6206306)
Walter Salzburger (15544)
Astrid Böhne (3408194)

January 2019

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. T...

Additional file 2: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Table S3. KEGG annotation of the G. przewalskii reference transcriptome. (XLSX 180 kb

Additional file 8: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Table S9. Correlation coefficients between modules and sample groups with corresponding p-values. (X...

Additional file 7: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Fei Tian (41830)
Sijia Liu (1751842)
Jianquan Shi (6173855)
Hongfang Qi (6173861)
Kai Zhao (53042)
Baosheng Xie (6173870)

January 2019

Figure S1. Eigengene expression pattern of each module. The a-axis represented the individual sample...

Additional file 2: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in large fish. FDR significant genes used for the GSEA are highlighte...

Additional file 9: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in December fish. FDR significant genes used for the GSEA are highlig...

Additional file 8: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in September fish. FDR significant genes used for the GSEA are highli...

Additional file 14: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 11: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in female fish. FDR significant genes used for the GSEA are highlight...

Additional file 12: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Contigs with higher expression in male fish. FDR significant genes used for the GSEA are highlighted...

Additional file 15: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 5: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 6: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Broad Institute gene set enrichment analysis (GSEA) highlighting significant pathwa...

Additional file 1: of Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate

Beide Fu (214322)
Xiaomu Yu (500657)
Jingou Tong (500658)
Meixia Pang (5049500)
Ying Zhou (25031)
Qingshan Liu (1286793)
Wenjing Tao (239332)

April 2019

Table S1. KEGG enrichment analysis of highly expressed genes in liver tissue. (XLSX 13 kb

Additional file 4: of Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

Roy Danzmann (3501500)
Andrea Kocmarek (3501506)
Joseph Norman (3501497)
Caird Rexroad (3501503)
Yniv Palti (166374)

January 2016

Results from the Panther database gene set enrichment analysis (GSEA) comparing differences in GO ca...

Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Athimed El Taher (3331803)
Nicolás Lichilín (6206306)
Walter Salzburger (15544)
Astrid Böhne (3408194)

January 2019

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. T...

Additional file 1: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Abstract

Extracted data

Additional file 1: of Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii

Abstract

Extracted data

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