Figure S8. Evaluation of enterotying protocols for Dutch children. (a-c) Evaluation of optimal cluster number by using the DMM protocol (a), the PAM-JSD protocol (b) and the PAM-BC protocol (c). The optimal number of clusters was calculated using Laplace approximation for the DMM protocol (a) and the CalinskiâHarabasz index for the PAM-based protocols (b-c). Cluster stability using the DMM (d), the PAM-JSD (e) and the PAM-BC protocols (f). The X axis indicates resampling number and the Y axis indicates the consistency of resampling relative to the original result based on 281 samples. (PDF 221 kb
Total nutrient intake over tertiles milk consumption in children aged 7â13 years. A p-value of 0.0...
Figure S1. PCoA based on Bray-Curtis distances of genus-level relative abundance profiles of the sam...
Melting curves of PCR amplicons from probiotic strains and bacterial preterm isolates. a Melting cur...
Table S1. Summary of phenotypic information of Dutch children at 6â9âyears of age. Table S2. Seq...
Figure S2. Gene count distribution in Dutch children. Black indicates all individuals, n = 281; red ...
Figure S2. Abundance of Core microbiota in each sample, by sample number, grouped by child. Barplot ...
Figure S3. Comparison of gut microbial compositional and functional structure between enterotypes. (...
Figure S4. Comparison of gut microbial functional potentials between enterotypes. (a) Differentially...
Figure S5. Correlations between continuous phenotypic parameters and species profile in the entire c...
Figure S1. Rarefaction analysis of the species richness. Rarefaction curves showed a trend of an inc...
Table S1. Statistical output of all PERMANOVA analysis. Table S2. Table of bacteria, at all taxonomi...
Figure S7. Correlations between Streptococcus species profile and selected phenotypic parameters in ...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Number of 16S rRNA and wide genome sequences generated per sample. This table shows the number of ra...
Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...
Total nutrient intake over tertiles milk consumption in children aged 7â13 years. A p-value of 0.0...
Figure S1. PCoA based on Bray-Curtis distances of genus-level relative abundance profiles of the sam...
Melting curves of PCR amplicons from probiotic strains and bacterial preterm isolates. a Melting cur...
Table S1. Summary of phenotypic information of Dutch children at 6â9âyears of age. Table S2. Seq...
Figure S2. Gene count distribution in Dutch children. Black indicates all individuals, n = 281; red ...
Figure S2. Abundance of Core microbiota in each sample, by sample number, grouped by child. Barplot ...
Figure S3. Comparison of gut microbial compositional and functional structure between enterotypes. (...
Figure S4. Comparison of gut microbial functional potentials between enterotypes. (a) Differentially...
Figure S5. Correlations between continuous phenotypic parameters and species profile in the entire c...
Figure S1. Rarefaction analysis of the species richness. Rarefaction curves showed a trend of an inc...
Table S1. Statistical output of all PERMANOVA analysis. Table S2. Table of bacteria, at all taxonomi...
Figure S7. Correlations between Streptococcus species profile and selected phenotypic parameters in ...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Number of 16S rRNA and wide genome sequences generated per sample. This table shows the number of ra...
Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...
Total nutrient intake over tertiles milk consumption in children aged 7â13 years. A p-value of 0.0...
Figure S1. PCoA based on Bray-Curtis distances of genus-level relative abundance profiles of the sam...
Melting curves of PCR amplicons from probiotic strains and bacterial preterm isolates. a Melting cur...