Additional file 3: of Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

Figure S2. Circular diagrams of the S. Typhimurium chromosome and plasmids showing the distribution and abundance of mapped transposon insertions. Transposon insertions were randomly distributed across the chromosome and plasmids of S. Typhimurium in the input pool and output pools from the ileal wall and MLNs. The inner two rings indicate the positions of annotated genes, coloured according to GC content (blue = low, yellow = intermediate, red = high). The outer ring indicates the number of transposon-flanking sequence reads obtained at each position. Peak heights are scaled relative to the highest peak in each diagram. (TIFF 914 kb