Additional file 2: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Additional file 1: of Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. ‘macula’

Shohei Takuno (303812)
Ryutaro Miyagi (3266031)
Jun-ichi Onami (5864441)
Shiho Takahashi-Kariyazono (4383472)
Akie Sato (4383469)
Herbert Tichy (4383463)
Masato Nikaido (3544154)
Mitsuto Aibara (68371)
Shinji Mizoiri (209526)
Hillary Mrosso (4383460)
Semvua Mzighani (4383466)
Norihiro Okada (2583)
Yohey Terai (209523)

March 2019

Figure S1. (A) Site frequency spectrum of Lake Victoria cichlids. The white and black bars represent...

Additional file 2: Table S2. of Phylogeographic structure, cryptic speciation and demographic history of the sharpbelly (Hemiculter leucisculus), a freshwater habitat generalist from southern China

Weitao Chen (3155154)
Zaixuan Zhong (4431553)
Wei Dai (95957)
Qi Fan (160566)
Shunping He (209621)

September 2017

Information of primer pairs used in our study. Table S3 Summary statistics for the 13 loci used in t...

Additional file 2: of East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation

Frederic Schedel (6637373)
Zuzana Musilova (3448430)
Ulrich Schliewen (3312084)

April 2019

Table S3. Overview of the taxon sampling for the nuclear markers (RAG1, ENC1, Rh1 and ttna TMO) with...

Additional file 3: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Frequency distribution of global FST of Stolothrissa tanganicae per SNP. Grouping by sampling site a...

Additional file 1: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Sequencing quality and information on missing data per individual. Table shows the sampling site, in...

Additional file 5: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Individual-based latent fixed mixed model (LFMM) analysis. Distribution of adjusted p-values, correc...

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae : a lack of population structure calls for integrated management of this important fisheries target species

De Keyzer, Els L. R.
De Corte, Zoe
Van Steenberge, Maarten
Raeymaekers, Joost A. M.
Calboli, Federico C. F.
Kmentova, Nikol
Mulimbwa, Theophile N'Sibula
Virgilio, Massimiliano
Vangestel, Carl
Mulungula, Pascal Masilya
Volckaert, Filip A. M.
Vanhove, Maarten P. M.

January 2019

BackgroundClupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in ...

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els L. R. De Keyzer
Zoë De Corte
Maarten Van Steenberge
Joost A. M. Raeymaekers
Federico C. F. Calboli
Nikol Kmentová
Théophile N’Sibula Mulimbwa
Massimiliano Virgilio
Carl Vangestel
Pascal Masilya Mulungula
Filip A. M. Volckaert
Maarten P. M. Vanhove

January 2019

Abstract Background Clupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of ...

Additional file 1: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

Tables (.docx with: 1) list of material and sampling sites, 2) morphological parameters studied, 3) ...

Additional file 4: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

Output of cluster analysis performed in Structure. Groups are indicated as they occur along the shor...

Additional file 3: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

AFLP-based Neighbour Joining tree of 108 southern specimens of Tropheus. Three T. duboisi specimens ...

Additional file 2: of Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres

Mingbo Yin (701779)
Xiaoyu Wang (182979)
Xiaolin Ma (701778)
Sabine GieĂler (5712023)
Adam Petrusek (219109)
Johanna Griebel (810924)
Wei Hu (6560)
Justyna Wolinska (701777)

September 2018

Figure S1. UPGMA clustering of D. galeata populations sampled from Eastern China and Central Europe ...

The first genomic study on Lake Tanganyika sprat Stolothrissa tanganicae indicates a lack of population structure in this important fisheries target

De Keyzer, E (via Mendeley Data)

December 2019

Clupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in one of the...

The Genetic Population Structure of Lake Tanganyika’s Lates Species Flock, an Endemic Radiation of Pelagic Top Predators

Rick, Jessica A
Junker, Julian
Kimirei, Ismael A
Sweke, Emmanuel A
Mosille, Julieth B
Dinkel, Christian
Mwaiko, Salome
Seehausen, Ole
Wagner, Catherine E

December 2021

Understanding genetic connectivity plays a crucial role in species conservation decisions, and genet...

Additional file 1: of Evaluating the role of Pleistocene refugia, rivers and environmental variation in the diversification of central African duikers (genera Cephalophus and Philantomba)

Stephan Ntie (4418035)
Anne Davis (4418038)
Katrin Hils (4418032)
Patrick Mickala (4418047)
Henri Thomassen (4418050)
Katy Morgan (517866)
Hadrien Vanthomme (2911685)
Mary Gonder (4418041)
Nicola Anthony (4418044)

September 2017

Supplementary tables. Table S1. Sampling locations by country, site name, letter code, and correspon...

Additional file 1: of Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. ‘macula’

Shohei Takuno (303812)
Ryutaro Miyagi (3266031)
Jun-ichi Onami (5864441)
Shiho Takahashi-Kariyazono (4383472)
Akie Sato (4383469)
Herbert Tichy (4383463)
Masato Nikaido (3544154)
Mitsuto Aibara (68371)
Shinji Mizoiri (209526)
Hillary Mrosso (4383460)
Semvua Mzighani (4383466)
Norihiro Okada (2583)
Yohey Terai (209523)

March 2019

Figure S1. (A) Site frequency spectrum of Lake Victoria cichlids. The white and black bars represent...

Additional file 2: Table S2. of Phylogeographic structure, cryptic speciation and demographic history of the sharpbelly (Hemiculter leucisculus), a freshwater habitat generalist from southern China

Weitao Chen (3155154)
Zaixuan Zhong (4431553)
Wei Dai (95957)
Qi Fan (160566)
Shunping He (209621)

September 2017

Information of primer pairs used in our study. Table S3 Summary statistics for the 13 loci used in t...

Additional file 2: of East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation

Frederic Schedel (6637373)
Zuzana Musilova (3448430)
Ulrich Schliewen (3312084)

April 2019

Table S3. Overview of the taxon sampling for the nuclear markers (RAG1, ENC1, Rh1 and ttna TMO) with...

Additional file 3: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Frequency distribution of global FST of Stolothrissa tanganicae per SNP. Grouping by sampling site a...

Additional file 1: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Sequencing quality and information on missing data per individual. Table shows the sampling site, in...

Additional file 5: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els De Keyzer (6187574)
Zoë De Corte (5939663)
Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Federico Calboli (3323865)
Nikol Kmentová (6187577)
Théophile Mulimbwa (6187580)
Massimiliano Virgilio (182967)
Carl Vangestel (215100)
Pascal Mulungula (6187583)
Filip Volckaert (3263634)
Maarten Vanhove (4638175)

January 2019

Individual-based latent fixed mixed model (LFMM) analysis. Distribution of adjusted p-values, correc...

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae : a lack of population structure calls for integrated management of this important fisheries target species

De Keyzer, Els L. R.
De Corte, Zoe
Van Steenberge, Maarten
Raeymaekers, Joost A. M.
Calboli, Federico C. F.
Kmentova, Nikol
Mulimbwa, Theophile N'Sibula
Virgilio, Massimiliano
Vangestel, Carl
Mulungula, Pascal Masilya
Volckaert, Filip A. M.
Vanhove, Maarten P. M.

January 2019

BackgroundClupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in ...

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Els L. R. De Keyzer
Zoë De Corte
Maarten Van Steenberge
Joost A. M. Raeymaekers
Federico C. F. Calboli
Nikol Kmentová
Théophile N’Sibula Mulimbwa
Massimiliano Virgilio
Carl Vangestel
Pascal Masilya Mulungula
Filip A. M. Volckaert
Maarten P. M. Vanhove

January 2019

Abstract Background Clupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of ...

Additional file 1: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

Tables (.docx with: 1) list of material and sampling sites, 2) morphological parameters studied, 3) ...

Additional file 4: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

Output of cluster analysis performed in Structure. Groups are indicated as they occur along the shor...

Additional file 3: of Delineating species along shifting shorelines: Tropheus (Teleostei, Cichlidae) from the southern subbasin of Lake Tanganyika

Maarten Van Steenberge (732001)
Joost Raeymaekers (5043797)
Pascal Hablützel (3558584)
Maarten Vanhove (4638175)
Stephan Koblmüller (68368)
Jos Snoeks (266525)

November 2018

AFLP-based Neighbour Joining tree of 108 southern specimens of Tropheus. Three T. duboisi specimens ...

Additional file 2: of Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres

Mingbo Yin (701779)
Xiaoyu Wang (182979)
Xiaolin Ma (701778)
Sabine GieĂler (5712023)
Adam Petrusek (219109)
Johanna Griebel (810924)
Wei Hu (6560)
Justyna Wolinska (701777)

September 2018

Figure S1. UPGMA clustering of D. galeata populations sampled from Eastern China and Central Europe ...

The first genomic study on Lake Tanganyika sprat Stolothrissa tanganicae indicates a lack of population structure in this important fisheries target

De Keyzer, E (via Mendeley Data)

December 2019

Clupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in one of the...

The Genetic Population Structure of Lake Tanganyika’s Lates Species Flock, an Endemic Radiation of Pelagic Top Predators

Rick, Jessica A
Junker, Julian
Kimirei, Ismael A
Sweke, Emmanuel A
Mosille, Julieth B
Dinkel, Christian
Mwaiko, Salome
Seehausen, Ole
Wagner, Catherine E

December 2021

Understanding genetic connectivity plays a crucial role in species conservation decisions, and genet...

Additional file 1: of Evaluating the role of Pleistocene refugia, rivers and environmental variation in the diversification of central African duikers (genera Cephalophus and Philantomba)

Stephan Ntie (4418035)
Anne Davis (4418038)
Katrin Hils (4418032)
Patrick Mickala (4418047)
Henri Thomassen (4418050)
Katy Morgan (517866)
Hadrien Vanthomme (2911685)
Mary Gonder (4418041)
Nicola Anthony (4418044)

September 2017

Supplementary tables. Table S1. Sampling locations by country, site name, letter code, and correspon...

Additional file 1: of Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. ‘macula’

Shohei Takuno (303812)
Ryutaro Miyagi (3266031)
Jun-ichi Onami (5864441)
Shiho Takahashi-Kariyazono (4383472)
Akie Sato (4383469)
Herbert Tichy (4383463)
Masato Nikaido (3544154)
Mitsuto Aibara (68371)
Shinji Mizoiri (209526)
Hillary Mrosso (4383460)
Semvua Mzighani (4383466)
Norihiro Okada (2583)
Yohey Terai (209523)

March 2019

Figure S1. (A) Site frequency spectrum of Lake Victoria cichlids. The white and black bars represent...

Additional file 2: Table S2. of Phylogeographic structure, cryptic speciation and demographic history of the sharpbelly (Hemiculter leucisculus), a freshwater habitat generalist from southern China

Weitao Chen (3155154)
Zaixuan Zhong (4431553)
Wei Dai (95957)
Qi Fan (160566)
Shunping He (209621)

September 2017

Information of primer pairs used in our study. Table S3 Summary statistics for the 13 loci used in t...

Additional file 2: of East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation

Frederic Schedel (6637373)
Zuzana Musilova (3448430)
Ulrich Schliewen (3312084)

April 2019

Table S3. Overview of the taxon sampling for the nuclear markers (RAG1, ENC1, Rh1 and ttna TMO) with...

Additional file 2: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Abstract

Extracted data

Additional file 2: of First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species

Abstract

Extracted data

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