Pathway enrichment summary. Table S5. JASPAR and TRANSFAC motif enrichments in shared CS and senescence responses. Table S6. ENCODE TF binding motif enrichments in shared CS and senescence responses. Table S7. JASPAR and TRANSFAC motif enrichment using self-contained methods. Table S8. ENCODE TF binding motif enrichments using self-contained methods. Table S9. Wikipathways enrichments among top-50 stably expressed genes. Table S10. Wikipathways enrichments using self-contained methods. (XLSX 200 kb
Table S1. Top 25 upregulated genes in IPF vs. control (SAM analysis). Table S2. IPF vs. control, Ing...
Table S1. Clinical characteristics of subjects, stratified by gender. Table S2. Proteins significant...
Table E2: RNA-sequencing data from COPD senescence-enriched small airway fibroblasts: SAF from 6 COP...
RNA-seq values and tests. Table S1. Normalized expression values from RNA-seq per transcript. Table ...
Figure S1. Validation of RNA-seq expression fold changes. Figure S2. Summary of overlaps in CSE and ...
Transcription Factor Binding Sites within upstream regions of genes down-regulated in both types of ...
Table S1. OIS-responsive bi-directional transcriptional units. Table S2. sgRNA oligo list. Table S3....
Table S1. A list of 44 probes upregulated by CSE exposure in both NHBEs and SAECs. Table S2. A list ...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Hierarchically compiled output of an analysis for master regulators orchestrating gene expression pr...
Comparison of log fold changes in 50 differentially expressed genes that overlap Huan et al. 2016. A...
Tables S1, S2, S3, S4, S5 and S6. Table S1. This table provides: a) Gene-specific assay information ...
Supplemental Tables: Additional tables to support the findings of this study. Table S4. Differential...
Descriptive statistics for H4K20me3, histone H4, and input DNA ChIP sequencing reads from proliferat...
Figure S1. Analysis of H3K4me1 and H3K27ac modifications on the 13q-Enh using ChIP assays in Beas-2B...
Table S1. Top 25 upregulated genes in IPF vs. control (SAM analysis). Table S2. IPF vs. control, Ing...
Table S1. Clinical characteristics of subjects, stratified by gender. Table S2. Proteins significant...
Table E2: RNA-sequencing data from COPD senescence-enriched small airway fibroblasts: SAF from 6 COP...
RNA-seq values and tests. Table S1. Normalized expression values from RNA-seq per transcript. Table ...
Figure S1. Validation of RNA-seq expression fold changes. Figure S2. Summary of overlaps in CSE and ...
Transcription Factor Binding Sites within upstream regions of genes down-regulated in both types of ...
Table S1. OIS-responsive bi-directional transcriptional units. Table S2. sgRNA oligo list. Table S3....
Table S1. A list of 44 probes upregulated by CSE exposure in both NHBEs and SAECs. Table S2. A list ...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Hierarchically compiled output of an analysis for master regulators orchestrating gene expression pr...
Comparison of log fold changes in 50 differentially expressed genes that overlap Huan et al. 2016. A...
Tables S1, S2, S3, S4, S5 and S6. Table S1. This table provides: a) Gene-specific assay information ...
Supplemental Tables: Additional tables to support the findings of this study. Table S4. Differential...
Descriptive statistics for H4K20me3, histone H4, and input DNA ChIP sequencing reads from proliferat...
Figure S1. Analysis of H3K4me1 and H3K27ac modifications on the 13q-Enh using ChIP assays in Beas-2B...
Table S1. Top 25 upregulated genes in IPF vs. control (SAM analysis). Table S2. IPF vs. control, Ing...
Table S1. Clinical characteristics of subjects, stratified by gender. Table S2. Proteins significant...
Table E2: RNA-sequencing data from COPD senescence-enriched small airway fibroblasts: SAF from 6 COP...