Additional file 1: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Additional file 1: Table S1. of Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages

Shuang Yin (2049994)
Brigida Rusconi (3551264)
Fatemeh Sanjar (3551270)
Kakolie Goswami (3551267)
Lingzi Xiaoli (3551273)
Mark Eppinger (78034)
Edward Dudley (378637)

September 2015

Information on Escherichia coli O157:H7 strains used in this study, and Genbank accession numbers fo...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...

Additional file 3: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...

Additional file 2: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...

Additional file 4: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

166 genes searched by local blast analysis using the NCBI blast tool; description: list of genes sea...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain
André Birgy
Sandrine Adiba
Mélanie Magnan
Céline Courroux
Corinne Levy
Robert Cohen
Philippe Bidet
Stéphane Bonacorsi

January 2019

Abstract Background To describe the temporal dynamics, molecular characterization, clinical and ex v...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 1: Table S1. of Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages

Shuang Yin (2049994)
Brigida Rusconi (3551264)
Fatemeh Sanjar (3551270)
Kakolie Goswami (3551267)
Lingzi Xiaoli (3551273)
Mark Eppinger (78034)
Edward Dudley (378637)

September 2015

Information on Escherichia coli O157:H7 strains used in this study, and Genbank accession numbers fo...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...

Additional file 3: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...

Additional file 2: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...

Additional file 4: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

166 genes searched by local blast analysis using the NCBI blast tool; description: list of genes sea...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Geslain, Guillaume
Birgy, André
Adiba, Sandrine
Magnan, Mélanie
Courroux, Céline
Levy, Corinne
Cohen, Robert
Bidet, Philippe
Bonacorsi, Stéphane

January 2019

International audienceBACKGROUND: To describe the temporal dynamics, molecular characterization, cli...

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain
André Birgy
Sandrine Adiba
Mélanie Magnan
Céline Courroux
Corinne Levy
Robert Cohen
Philippe Bidet
Stéphane Bonacorsi

January 2019

Abstract Background To describe the temporal dynamics, molecular characterization, clinical and ex v...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 1: Table S1. of Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages

Shuang Yin (2049994)
Brigida Rusconi (3551264)
Fatemeh Sanjar (3551270)
Kakolie Goswami (3551267)
Lingzi Xiaoli (3551273)
Mark Eppinger (78034)
Edward Dudley (378637)

September 2015

Information on Escherichia coli O157:H7 strains used in this study, and Genbank accession numbers fo...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...

Additional file 1: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Abstract

Extracted data

Additional file 1: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Abstract

Extracted data

Topics

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