Additional file 12: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Omrani, Mariem
Roth, Morgane
Roch, Guillaume
Blanc, Alain
Morris, Cindy E.

January 2019

Background: Diseases caused by Pseudomonas syringae (Ps) are recognized as the most damaging factors...

Genome-wide association study of partial resistance to bacterial canker of apricot

Omrani, Mariem
Roch, Guillaume
Blanc, Alain
Morris E., Cindy
Audergon, Jean Marc

January 2018

Apricot, a highly valuable crop is threatened by the growing importance of bacterial canker caused b...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 3: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Population Structure (Q) of the apricot core-collection based on data of 21,942 independent SNPs. Ge...

Additional file 4: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Relation between susceptibility phenotypes lgc and bs G BLUPs and ancestral fractions in the apricot...

Additional file 11: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Information of plant material used in the study: geographical origin, name and number of year repeti...

Additional file 2: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Genetic (G) and genetic x year (G × Y) distributions of lgc and bs BLUPs. A. and B. lgc and bs densi...

Additional file 6: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

QQ (quantile-quantile) plots of the observed p-values distribution for lgc and bs G and G × Y BLUPs....

Additional file 1: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Time series of degree-days over winter period in lâAmarine. 2013 to 2016 annual data from November...

Additional file 8: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Distribution of r vs 2 $$ {r}_{vs}^2 $$ unbiased estimates between intra-chromosomal, inter-chromoso...

Additional file 9: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Individual/multi-locus ANOVA and post-hoc mean comparison tests of all associated markers on G BLUPs...

Additional file 5: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Linkage disequilibrium (LD) decay over physical position in the apricot core-collection. Pairwise r2...

Additional file 7: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Effect of all detected loci using genome-wide multi-locus and multi-variate (mvLMM) mixed models on ...

Additional file 10: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Marker haplotype composition of the apricot core-collection considering all detected loci. Groups of...

Additional file 13: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Genotypic data of the 63,236 SNPs used for GWAS. MAF: Minor Allele Frequency. Genotypes are coded ac...

Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Omrani, Mariem
Roth, Morgane
Roch, Guillaume
Blanc, Alain
Morris, Cindy E.

January 2019

Background: Diseases caused by Pseudomonas syringae (Ps) are recognized as the most damaging factors...

Genome-wide association study of partial resistance to bacterial canker of apricot

Omrani, Mariem
Roch, Guillaume
Blanc, Alain
Morris E., Cindy
Audergon, Jean Marc

January 2018

Apricot, a highly valuable crop is threatened by the growing importance of bacterial canker caused b...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 3: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Population Structure (Q) of the apricot core-collection based on data of 21,942 independent SNPs. Ge...

Additional file 4: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Relation between susceptibility phenotypes lgc and bs G BLUPs and ancestral fractions in the apricot...

Additional file 11: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Information of plant material used in the study: geographical origin, name and number of year repeti...

Additional file 2: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Genetic (G) and genetic x year (G × Y) distributions of lgc and bs BLUPs. A. and B. lgc and bs densi...

Additional file 6: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

QQ (quantile-quantile) plots of the observed p-values distribution for lgc and bs G and G × Y BLUPs....

Additional file 1: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Time series of degree-days over winter period in lâAmarine. 2013 to 2016 annual data from November...

Additional file 8: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Distribution of r vs 2 $$ {r}_{vs}^2 $$ unbiased estimates between intra-chromosomal, inter-chromoso...

Additional file 9: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Individual/multi-locus ANOVA and post-hoc mean comparison tests of all associated markers on G BLUPs...

Additional file 5: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Linkage disequilibrium (LD) decay over physical position in the apricot core-collection. Pairwise r2...

Additional file 7: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Effect of all detected loci using genome-wide multi-locus and multi-variate (mvLMM) mixed models on ...

Additional file 10: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Marker haplotype composition of the apricot core-collection considering all detected loci. Groups of...

Additional file 13: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Mariem Omrani (6248867)
Morgane Roth (3223992)
Guillaume Roch (6248873)
Alain Blanc (3768475)
Cindy Morris (449679)
Jean-Marc Audergon (3312966)

January 2019

Genotypic data of the 63,236 SNPs used for GWAS. MAF: Minor Allele Frequency. Genotypes are coded ac...

Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Omrani, Mariem
Roth, Morgane
Roch, Guillaume
Blanc, Alain
Morris, Cindy E.

January 2019

Background: Diseases caused by Pseudomonas syringae (Ps) are recognized as the most damaging factors...

Genome-wide association study of partial resistance to bacterial canker of apricot

Omrani, Mariem
Roch, Guillaume
Blanc, Alain
Morris E., Cindy
Audergon, Jean Marc

January 2018

Apricot, a highly valuable crop is threatened by the growing importance of bacterial canker caused b...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 12: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Abstract

Extracted data

Additional file 12: of Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Abstract

Extracted data

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