Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

Publication date

January 2019

DOI

10.6084/m9.figshare.7617569.v1

Abstract

Figure S1. Frequency distribution of PN: net photosynthetic rate; gs: stomatal conductance; E: transpiration rate; Ci: intercellular CO2 concentration, CMS: cell membrane stability, TIL: number of tillers per plant; PAN: number of panicles per plant; FG: number of filled grains per plant and UFG: number of unfilled grains per plant for 104 rice accessions under control (a and b) and salt stress conditions (c and d). (PDF 306âkb

Extracted data

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Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

Open link

Publication date

January 2019

DOI

10.6084/m9.figshare.7617569.v1

Abstract

Extracted data

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Table_3_High Performance of Photosynthesis and Osmotic Adjustment Are Associated With Salt Tolerance Ability in Rice Carrying Drought Tolerance QTL: Physiological and Co-expression Network Analysis.XLSX

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Table_1_High Performance of Photosynthesis and Osmotic Adjustment Are Associated With Salt Tolerance Ability in Rice Carrying Drought Tolerance QTL: Physiological and Co-expression Network Analysis.XLSX

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Additional file 5: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S2. Population structure of 190 rice association panels, which consisted mostly of the indica...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 4: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S3. Pearson’s correlation coefficients of the phenotypic traits measured in 104 rice accession...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 7: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S3. The peak regions on rice chromosomes containing significant SNPs from GWAS of PAN (a and ...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 6: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S4.Â List of significant SNPs from GWA mapping for various traits under control and stress con...

Additional file 8: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S4. Manhattan plots of different traits related to salinity tolerance at seedling stage. The ...

Additional file 1: of Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes

Raheleh Mirdar Mansuri (6423548)
Zahra-Sadat Shobbar (6423551)
Nadali Babaeian Jelodar (6423554)
Mohammad Ghaffari (6423557)
Ghorban-Ali Nematzadeh (6423560)
Saeedeh Asari (6423563)

March 2019

Table S1. Summary of sequencing results. Table S2. A summary of the assembly statistics. Table S4. H...

Additional file 6: Table S3. of Genome-wide association study of salt tolerance at the seed germination stage in rice

Yingyao Shi (4055269)
Lingling Gao (3232350)
Zhichao Wu (410668)
Xiaojing Zhang (163406)
Mingming Wang (394106)
Congshun Zhang (4055272)
Fan Zhang (46132)
Yongli Zhou (416309)
Zhikang Li (416310)

May 2017

Filtered and effective numbers of SNPs across subpopulations and adjusted significant P value thresh...

Additional file 8: of The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

Denver Walitang (4539064)
Chang-Gi Kim (748625)
Kiyoon Kim (2901362)
Yeongyeong Kang (4539061)
Young Kim (4006)
Tongmin Sa (508424)

March 2018

Figure S5. Heat map, relative abundance and total abundance of ribotypes (T-RF’s) after HhaI digesti...

Additional file 3: of The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

Denver Walitang (4539064)
Chang-Gi Kim (748625)
Kiyoon Kim (2901362)
Yeongyeong Kang (4539061)
Young Kim (4006)
Tongmin Sa (508424)

March 2018

Figure S1. Heat map, relative abundance and total abundance of ribotypes (T-RFâs) present in the d...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Additional file 5: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S2. Population structure of 190 rice association panels, which consisted mostly of the indica...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 4: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S3. Pearson’s correlation coefficients of the phenotypic traits measured in 104 rice accession...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 7: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S3. The peak regions on rice chromosomes containing significant SNPs from GWAS of PAN (a and ...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 6: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S4.Â List of significant SNPs from GWA mapping for various traits under control and stress con...

Additional file 8: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S4. Manhattan plots of different traits related to salinity tolerance at seedling stage. The ...

Additional file 1: of Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes

Raheleh Mirdar Mansuri (6423548)
Zahra-Sadat Shobbar (6423551)
Nadali Babaeian Jelodar (6423554)
Mohammad Ghaffari (6423557)
Ghorban-Ali Nematzadeh (6423560)
Saeedeh Asari (6423563)

March 2019

Table S1. Summary of sequencing results. Table S2. A summary of the assembly statistics. Table S4. H...

Additional file 6: Table S3. of Genome-wide association study of salt tolerance at the seed germination stage in rice

Yingyao Shi (4055269)
Lingling Gao (3232350)
Zhichao Wu (410668)
Xiaojing Zhang (163406)
Mingming Wang (394106)
Congshun Zhang (4055272)
Fan Zhang (46132)
Yongli Zhou (416309)
Zhikang Li (416310)

May 2017

Filtered and effective numbers of SNPs across subpopulations and adjusted significant P value thresh...

Additional file 8: of The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

Denver Walitang (4539064)
Chang-Gi Kim (748625)
Kiyoon Kim (2901362)
Yeongyeong Kang (4539061)
Young Kim (4006)
Tongmin Sa (508424)

March 2018

Figure S5. Heat map, relative abundance and total abundance of ribotypes (T-RF’s) after HhaI digesti...

Additional file 3: of The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

Denver Walitang (4539064)
Chang-Gi Kim (748625)
Kiyoon Kim (2901362)
Yeongyeong Kang (4539061)
Young Kim (4006)
Tongmin Sa (508424)

March 2018

Figure S1. Heat map, relative abundance and total abundance of ribotypes (T-RFâs) present in the d...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Noppawan Nounjan (5597234)
Pakkanan Chansongkrow (5597237)
Varodom Charoensawan (614578)
Jonaliza L. Siangliw (5597240)
Theerayut Toojinda (4018604)
Supachitra Chadchawan (5597243)
Piyada Theerakulpisut (5597246)

August 2018

Understanding specific biological processes involving in salt tolerance mechanisms is important f...

Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Abstract

Extracted data

Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Abstract

Extracted data

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