Additional file 6: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Table_4_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Table_2_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Additional file 5: Table S4. of Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm

Shefali Mishra (3476414)
Balwant Singh (2136895)
Kabita Panda (3476411)
Bikram Singh (659369)
Nisha Singh (289415)
Pragati Misra (3476408)
Vandna Rai (3173445)
Nagendra Singh (359528)

March 2016

List of varieties and their classification in different sub-populations using Structure software. (C...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 7: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S3. The peak regions on rice chromosomes containing significant SNPs from GWAS of PAN (a and ...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 5: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S2. Population structure of 190 rice association panels, which consisted mostly of the indica...

Additional file 4: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S3. Pearson’s correlation coefficients of the phenotypic traits measured in 104 rice accession...

Additional file 6: Table S3. of Genome-wide association study of salt tolerance at the seed germination stage in rice

Yingyao Shi (4055269)
Lingling Gao (3232350)
Zhichao Wu (410668)
Xiaojing Zhang (163406)
Mingming Wang (394106)
Congshun Zhang (4055272)
Fan Zhang (46132)
Yongli Zhou (416309)
Zhikang Li (416310)

May 2017

Filtered and effective numbers of SNPs across subpopulations and adjusted significant P value thresh...

Additional file 8: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S4. Manhattan plots of different traits related to salinity tolerance at seedling stage. The ...

Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S1. Frequency distribution of PN: net photosynthetic rate; gs: stomatal conductance; E: trans...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 1: Table S1. of Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm

Shefali Mishra (3476414)
Balwant Singh (2136895)
Kabita Panda (3476411)
Bikram Singh (659369)
Nisha Singh (289415)
Pragati Misra (3476408)
Vandna Rai (3173445)
Nagendra Singh (359528)

March 2016

Â List of wild rice accessions, their place of collection and Standard Evaluation System (SES) score...

Table_3_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Full Paper Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

Vinod Kumar
Anshuman Singh
S. V. Amitha Mithra
S. L. Krishnamurthy
Swarup K. Parida
Sourabh Jain
Kapil K. Tiwari
Pankaj Kumar
Atmakuri R. Rao
S. K. Sharma
Jitendra P. Khurana
Nagendra K. Singh
Trilochan Mohapatra

August 2016

Salinity tolerance in rice is highly desirable to sustain production in areas rendered saline due to...

Table_4_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Table_2_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Additional file 5: Table S4. of Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm

Shefali Mishra (3476414)
Balwant Singh (2136895)
Kabita Panda (3476411)
Bikram Singh (659369)
Nisha Singh (289415)
Pragati Misra (3476408)
Vandna Rai (3173445)
Nagendra Singh (359528)

March 2016

List of varieties and their classification in different sub-populations using Structure software. (C...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 7: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S3. The peak regions on rice chromosomes containing significant SNPs from GWAS of PAN (a and ...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 5: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S2. Population structure of 190 rice association panels, which consisted mostly of the indica...

Additional file 4: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S3. Pearson’s correlation coefficients of the phenotypic traits measured in 104 rice accession...

Additional file 6: Table S3. of Genome-wide association study of salt tolerance at the seed germination stage in rice

Yingyao Shi (4055269)
Lingling Gao (3232350)
Zhichao Wu (410668)
Xiaojing Zhang (163406)
Mingming Wang (394106)
Congshun Zhang (4055272)
Fan Zhang (46132)
Yongli Zhou (416309)
Zhikang Li (416310)

May 2017

Filtered and effective numbers of SNPs across subpopulations and adjusted significant P value thresh...

Additional file 8: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S4. Manhattan plots of different traits related to salinity tolerance at seedling stage. The ...

Additional file 3: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Figure S1. Frequency distribution of PN: net photosynthetic rate; gs: stomatal conductance; E: trans...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 1: Table S1. of Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm

Shefali Mishra (3476414)
Balwant Singh (2136895)
Kabita Panda (3476411)
Bikram Singh (659369)
Nisha Singh (289415)
Pragati Misra (3476408)
Vandna Rai (3173445)
Nagendra Singh (359528)

March 2016

Â List of wild rice accessions, their place of collection and Standard Evaluation System (SES) score...

Table_3_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Full Paper Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

Vinod Kumar
Anshuman Singh
S. V. Amitha Mithra
S. L. Krishnamurthy
Swarup K. Parida
Sourabh Jain
Kapil K. Tiwari
Pankaj Kumar
Atmakuri R. Rao
S. K. Sharma
Jitendra P. Khurana
Nagendra K. Singh
Trilochan Mohapatra

August 2016

Salinity tolerance in rice is highly desirable to sustain production in areas rendered saline due to...

Table_4_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Table_2_The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.XLSX

Yanru Cui (3259320)
Fan Zhang (46132)
Yongli Zhou (416309)

October 2018

Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of...

Additional file 5: Table S4. of Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm

Shefali Mishra (3476414)
Balwant Singh (2136895)
Kabita Panda (3476411)
Bikram Singh (659369)
Nisha Singh (289415)
Pragati Misra (3476408)
Vandna Rai (3173445)
Nagendra Singh (359528)

March 2016

List of varieties and their classification in different sub-populations using Structure software. (C...

Additional file 6: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Abstract

Extracted data

Additional file 6: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Abstract

Extracted data

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