Genome_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are list...

Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Aligning sequences for phylogenetic analysis (multiple sequence alignment; MSA) is an important, but...

Phylogentic tree reporting the clustering of HBsAg sequences from plasma and liver tissue obtained from the 5 HBV genotype E infected patients with available liver biopsies.

Vincenzo Malagnino (4026317)
Romina Salpini (152458)
Gaetano Maffongelli (4026314)
Arianna Battisti (5040653)
Lavinia Fabeni (103620)
Lorenzo Piermatteo (5040650)
Luna Colagrossi (5040647)
Vanessa Fini (5040656)
Alessandra Ricciardi (3579503)
Cesare Sarrecchia (152500)
Carlo Federico Perno (103671)
Massimo Andreoni (103649)
Valentina Svicher (103599)
Loredana Sarmati (431865)

March 2018

<p>Phylogenetic tree was built by using HBsAg sequences from plasma and liver tissue obtained from t...

Genome_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Tree files estimated from sequence alignments of hepatitis B virus genomes. Trees are best maximum l...

Total_alignment_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Trees estimated from total alignments (genomes + fragmentary sequences) of hepatitis B viruses. Incl...

Total_alignment_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Trees estimated from total alignments (genomes + fragmentary sequences) of hepatitis B viruses. Incl...

S-region_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Trees estimate from S-region alignments of hepatitis B viruses. Includes the best maximum likelihood...

S-region_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Trees estimate from S-region alignments of hepatitis B viruses. Includes the best maximum likelihood...

Genotype_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Tree files used for genotype occupancy tests in hepatitis B viruses. Trees estimated from manual or ...

Genotype_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Tree files used for genotype occupancy tests in hepatitis B viruses. Trees estimated from manual or ...

Genome_alignments.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Sequence alignments of hepatitis B virus genomes and the S-region. Files include the manual genome a...

Genome_alignments.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Sequence alignments of hepatitis B virus genomes and the S-region. Files include the manual genome a...

Total_alignments.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Sequence alignments of the total (genomes + fragmentary sequences) hepatitis B virus data set. Files...

Total_alignments.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Sequence alignments of the total (genomes + fragmentary sequences) hepatitis B virus data set. Files...

Supplementary_Table_S1.xlsx

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are list...

Supplementary_Table_S1.xlsx

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are list...

Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Aligning sequences for phylogenetic analysis (multiple sequence alignment; MSA) is an important, but...

Phylogentic tree reporting the clustering of HBsAg sequences from plasma and liver tissue obtained from the 5 HBV genotype E infected patients with available liver biopsies.

Vincenzo Malagnino (4026317)
Romina Salpini (152458)
Gaetano Maffongelli (4026314)
Arianna Battisti (5040653)
Lavinia Fabeni (103620)
Lorenzo Piermatteo (5040650)
Luna Colagrossi (5040647)
Vanessa Fini (5040656)
Alessandra Ricciardi (3579503)
Cesare Sarrecchia (152500)
Carlo Federico Perno (103671)
Massimo Andreoni (103649)
Valentina Svicher (103599)
Loredana Sarmati (431865)

March 2018

<p>Phylogenetic tree was built by using HBsAg sequences from plasma and liver tissue obtained from t...

Genome_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Tree files estimated from sequence alignments of hepatitis B virus genomes. Trees are best maximum l...

Total_alignment_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Trees estimated from total alignments (genomes + fragmentary sequences) of hepatitis B viruses. Incl...

Total_alignment_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Trees estimated from total alignments (genomes + fragmentary sequences) of hepatitis B viruses. Incl...

S-region_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Trees estimate from S-region alignments of hepatitis B viruses. Includes the best maximum likelihood...

S-region_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Trees estimate from S-region alignments of hepatitis B viruses. Includes the best maximum likelihood...

Genotype_trees.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Tree files used for genotype occupancy tests in hepatitis B viruses. Trees estimated from manual or ...

Genotype_trees.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Tree files used for genotype occupancy tests in hepatitis B viruses. Trees estimated from manual or ...

Genome_alignments.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Sequence alignments of hepatitis B virus genomes and the S-region. Files include the manual genome a...

Genome_alignments.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Sequence alignments of hepatitis B virus genomes and the S-region. Files include the manual genome a...

Total_alignments.zip

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Sequence alignments of the total (genomes + fragmentary sequences) hepatitis B virus data set. Files...

Total_alignments.zip

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Sequence alignments of the total (genomes + fragmentary sequences) hepatitis B virus data set. Files...

Supplementary_Table_S1.xlsx

Therese A. Catanach (6279059)
Andrew D. Sweet (3200622)
Nam-phuong D. Nguyen (6279062)
Rhiannon M. Peery (6279065)
Andrew H. Debevec (6279068)
Andrea K. Thomer (3809041)
Amanda C. Owings (6279071)
Bret M. Boyd (5010173)
Aron D. Katz (6279074)
Felipe N. Soto-Adames (6067784)
Julie M. Allen (373857)

January 2019

Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are list...

Supplementary_Table_S1.xlsx

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Pairwise comparisons of hepatitis B virus phylogenies. Tree names (based on alignment type) are list...

Data from: Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus

Catanach, Therese A.
Sweet, Andrew D.
Nguyen, Nam-phuong D.
Peery, Rhiannon M.
Debevec, Andrew H.
Thomer, Andrea K.
Owings, Amanda C.
Boyd, Bret M.
Katz, Aron D.
Soto-Adames, Felipe N.
Allen, Julie M.

January 2019

Aligning sequences for phylogenetic analysis (multiple sequence alignment; MSA) is an important, but...

Phylogentic tree reporting the clustering of HBsAg sequences from plasma and liver tissue obtained from the 5 HBV genotype E infected patients with available liver biopsies.

Vincenzo Malagnino (4026317)
Romina Salpini (152458)
Gaetano Maffongelli (4026314)
Arianna Battisti (5040653)
Lavinia Fabeni (103620)
Lorenzo Piermatteo (5040650)
Luna Colagrossi (5040647)
Vanessa Fini (5040656)
Alessandra Ricciardi (3579503)
Cesare Sarrecchia (152500)
Carlo Federico Perno (103671)
Massimo Andreoni (103649)
Valentina Svicher (103599)
Loredana Sarmati (431865)

March 2018

<p>Phylogenetic tree was built by using HBsAg sequences from plasma and liver tissue obtained from t...

Abstract

Extracted data

Genome_trees.zip

Abstract

Extracted data

Related items

Related items